RetrogeneDB ID: | retro_eeur_89 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_5540:18008..18357(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSEEUG00000010390 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 83.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRG-VRAVRPKVLKRLSK |
MVQRLTY..RLSY.TASN.TRLSRTPGNR.VY.YTKKVGK.PKSAC..CPGRL.G.VR..RPKVLKRL.K | |
Retrocopy | MVQRLTYQHRLSYSTASNQTRLSRTPGNRTVYHYTKKVGKGPKSACDSCPGRLAG<VRVGRPKVLKRLPK |
Parental | TKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK-IVVKVLKAQAQSQKAK |
TKKHVSRAYGGSMCAKCVR.RIK..FLIE.QK.IV.KVLKAQAQSQKAK | |
Retrocopy | TKKHVSRAYGGSMCAKCVRHRIKPTFLIEQQK<IVIKVLKAQAQSQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 48 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 125 .84 RPM |
SRP017611_liver | 0 .00 RPM | 88 .27 RPM |