RetrogeneDB ID: | retro_sara_591 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_236234:44825..45091(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSSARG00000000177 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 71.28 % |
Parental protein coverage: | 97.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLKRLSKTKKHVSR-AYGGSMCAKCVRDRI |
S.TP.N.I...YTKKVGKA.KS.CG.CP..L.GV.A..PKVLKRL.K.K....R.AYGGSMC..CV.DRI | |
Retrocopy | SQTPVNSI---YTKKVGKALKSSCGMCPSQL*GVHAMTPKVLKRLYK-KRMPAR<AYGGSMCTMCVQDRI |
Parental | KRAFLIEEQKIVVKVLKAQAQSQK |
..AFLIEEQKIVVKVLKAQAQSQK | |
Retrocopy | NCAFLIEEQKIVVKVLKAQAQSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |