RetrogeneDB ID: | retro_etel_152 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_2682:98865..99147(+) | ||
Located in intron of: | ENSETEG00000001112 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C1D | ||
Ensembl ID: | ENSETEG00000014857 | ||
Aliases: | None | ||
Description: | C1D nuclear receptor corepressor [Source:HGNC Symbol;Acc:29911] |
Percent Identity: | 73.2 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LDPLEQ-AKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIREHMNRVKEITDKKKASKLDKGAAS |
LDPLEQ..KV.LVS.YT.NSM.WVYLA.QGV.PKEH.VKQE.ERI.EH.NRVKE....KKA.KL.KG... | |
Retrocopy | LDPLEQ<TKVGLVSVYTFNSMLWVYLAIQGVDPKEHAVKQEWERI*EHVNRVKEVIPHKKAGKLGKGGTM |
Parental | RFVKNALWEPKPKIASKVAKKG-KSKT |
RF.KNALWEPKP..AS.VAKKG.KSKT | |
Retrocopy | RFIKNALWEPKP-TASEVAKKG>KSKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |