RetrogeneDB ID:

retro_ggor_731

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:11:80303447..80303738(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C1D
Ensembl ID:ENSGGOG00000025982
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_731
CAGACTGGAGTTGAAGGCTGTGAGTCAGTCATTAAGGCACATGAAGAAATTAATGAAGACCATCCAGTGGAAATTCATGA
ATATTTGTCAATGCTTGAGAATTACACCGGTGCTGTGGATAATATGCTAAAGACCATGATGTCTGTTTCTTGAAATGAGT
TGTTGCAGAAGTTGGACCCACTTAAACAAGTGAAAGTGGATTTAGTTTCTATGCACACATTAAATTTAAAGTTTTGAGTT
TATTTGGCAACTCAAGGAGTTAATACTAAGAAACAGCTAGTAAAGCAGGAA

ORF - retro_ggor_731 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.16 %
Parental protein coverage: 53.89 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEEGEEQSWSAIMAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVS
..G.E...S.I.A.EEINED.PVEIHEYLS..EN..GAVD.MLKTMMSVS.NELLQKLDPL.Q.KVDLVS
RetrocopyQTGVEGCESVIKAHEEINEDHPVEIHEYLSMLENYTGAVDNMLKTMMSVS*NELLQKLDPLKQVKVDLVS
ParentalAYTLNSMFWVYLATQGVNPKEHPVKQE
..TLN..F.VYLATQGVN.K...VKQE
RetrocopyMHTLNLKF*VYLATQGVNTKKQLVKQE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 4 .32 RPM
SRP007412_cerebellum 0 .00 RPM 3 .47 RPM
SRP007412_heart 0 .00 RPM 1 .38 RPM
SRP007412_kidney 0 .00 RPM 13 .37 RPM
SRP007412_liver 0 .00 RPM 6 .96 RPM
SRP007412_testis 0 .00 RPM 9 .74 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_731 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_731 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_904
Pan troglodytes retro_ptro_624
Macaca mulatta retro_mmul_1109
Callithrix jacchus retro_cjac_856

Parental genes homology:
Parental genes homology involve 25 parental genes, and 57 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000048591 retrocopy
Bos taurus ENSBTAG000000045671 retrocopy
Canis familiaris ENSCAFG000000300991 retrocopy
Choloepus hoffmanni ENSCHOG000000067193 retrocopies
Callithrix jacchus ENSCJAG000000065892 retrocopies
Cavia porcellus ENSCPOG000000067391 retrocopy
Echinops telfairi ENSETEG000000148575 retrocopies
Felis catus ENSFCAG000000289331 retrocopy
Homo sapiens ENSG000001972235 retrocopies
Gorilla gorilla ENSGGOG00000025982 3 retrocopies
retro_ggor_573, retro_ggor_596, retro_ggor_731 ,
Loxodonta africana ENSLAFG000000020831 retrocopy
Myotis lucifugus ENSMLUG000000107914 retrocopies
Macaca mulatta ENSMMUG000000172093 retrocopies
Monodelphis domestica ENSMODG000000035613 retrocopies
Nomascus leucogenys ENSNLEG000000099734 retrocopies
Oryctolagus cuniculus ENSOCUG000000097711 retrocopy
Ochotona princeps ENSOPRG000000095863 retrocopies
Pongo abelii ENSPPYG000000123541 retrocopy
Pan troglodytes ENSPTRG000000235583 retrocopies
Rattus norvegicus ENSRNOG000000059821 retrocopy
Sorex araneus ENSSARG000000039131 retrocopy
Sarcophilus harrisii ENSSHAG000000083521 retrocopy
Sus scrofa ENSSSCG000000083542 retrocopies
Tupaia belangeri ENSTBEG000000097974 retrocopies
Tursiops truncatus ENSTTRG000000139822 retrocopies



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