RetrogeneDB ID: | retro_etel_1713 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_289099:78251..78737(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHORDC1 | ||
Ensembl ID: | ENSETEG00000013104 | ||
Aliases: | None | ||
Description: | cysteine and histidine-rich domain (CHORD) containing 1 [Source:HGNC Symbol;Acc:14525] |
Percent Identity: | 89.51 % |
Parental protein coverage: | 52.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TYQGLESLEEVCVYHSGVPIFHEGMKYWSCCRKKTSDFNT-LAQEGCTTGKHMWTKKDAGGKVVPCRHDW |
TYQGLESLEEVCV.HSGVPIFHEGMKYWSCCRKKTS.FNT.LAQEGCTTGKHMWTKKDAGG...PCRHDW | |
Retrocopy | TYQGLESLEEVCVNHSGVPIFHEGMKYWSCCRKKTSGFNTFLAQEGCTTGKHMWTKKDAGGQIIPCRHDW |
Parental | HQTGGEVTISIYAKNSLPERSRVEANSTLLNVLIVFEGEKEFHQNVKLWGVIDVKRSYVTMTATKIEITM |
HQTGGEV.ISI.AKNSLPE.SRVE.NSTLLN.LI.FE.EKEFHQNVKLWGVID.KRSYVTMTATKIEITM | |
Retrocopy | HQTGGEVIISINAKNSLPELSRVEVNSTLLNDLIAFEREKEFHQNVKLWGVIDIKRSYVTMTATKIEITM |
Parental | RKAEPMQWASLELPAVKKPENQ |
RKAEP.QWA.LELPA.KKPENQ | |
Retrocopy | RKAEPTQWANLELPAAKKPENQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000000903 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000013104 | 2 retrocopies |
retro_etel_1713 , retro_etel_1860,
|
Felis catus | ENSFCAG00000019389 | 1 retrocopy | |
Homo sapiens | ENSG00000110172 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000027396 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000017340 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005209 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000007079 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014147 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003523 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003764 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000004164 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000002910 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004205 | 1 retrocopy |