Parental gene:

CHORDC1, ENSMMUG00000005209

Aliases:None
Description:cysteine and histidine-rich domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001244685]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:14:88642338..88664787(-)


>ENSMMUG00000005209
ATGGCCTTGCTGTGCTACAACCGGGGCTGCGGTCAGCGCTTCGATCCCGAGACCAATTCCGACGATGCTTGCACATACCA
CCCAGGTGTTCCAGTCTTTCACGATGCATTGAAGGGTTGGTCTTGCTGTAAGAGAAGAACAACTGATTTTTCTGATTTCT
TAAGCATTGTAGGCTGTACAAAAGGTAGACATAATAGTGAGAAGCCACCTGAGCCAGTCAAACCTGAAGTCAAGACTACT
GAGAAGAAGGAACTATCTGAATTAAAACCTAAATTTCAGGAACACATCATTCAAGCCCCTAAGCCAGTAGAAGCAATAAA
AAGACCAAGCCCAGATGAACCAATGACAAATTTGGAATTAAAAATATCTGCCTCCCTAAAACAAGCACTTGATAAACTTA
AACTGTCATCAGGGAATGAAGAAGATAAAAAAGAAGAAGACAATGATGAAATTAAGATTGGGACCTCATGTAAGAATGGA
GGGTGTTCAAAGACATATCGGGGTCTAGAGAGTCTAGAAGAAGTCTGTGTATATCATTCTGGAGTACCTATTTTCCATGA
GGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAGGAGGGCTGTACAAAAG
GGAGACACATGTGGACTAAAAAAGATGCTGTAAGCTGCCAACATGACTGGCATCAGACCGGAGGTGAAGTTACCATTTCA
GTATATGCTAAAAATTCACTTCCAGAACTTAGTCGAGTAGAAGCAAATAGCACATTGTTAAATGTGCACATTGTATTTGA
AGGAGAGAAGGAATTTGATCAAAATGTGAAATTATGGGGTGTGATTGATGTAAAGCGAAGTTATGTAACTATGACTGCAA
CAAAGATTGAAATCAATATGAGAAAAGCGGAACCAATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCTAAAAAGCAGGAA
AAACAAAAAGATGACACAACAGATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 24 .83 RPM
SRP007412_brain 22 .19 RPM
SRP007412_cerebellum 16 .27 RPM
SRP007412_heart 15 .43 RPM
SRP007412_kidney 12 .32 RPM
SRP007412_liver 4 .16 RPM
SRP007412_testis 37 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000000903 ortholog_one2many 4 retrogenes
retro_cjac_2220, retro_cjac_2927, retro_cjac_4147, retro_cjac_815,
Echinops telfairi ENSETEG00000013104 ortholog_one2many 2 retrogenes
retro_etel_1713, retro_etel_1860,
Felis catus ENSFCAG00000019389 ortholog_many2many 1 retrogene
retro_fcat_137,
Homo sapiens ENSG00000110172 ortholog_one2one 3 retrogenes
retro_hsap_1452, retro_hsap_1903, retro_hsap_2252,
Gorilla gorilla ENSGGOG00000027396 ortholog_one2one 3 retrogenes
retro_ggor_1117, retro_ggor_1118, retro_ggor_1679,
Loxodonta africana ENSLAFG00000017340 ortholog_one2many 1 retrogene
retro_lafr_401,
Nomascus leucogenys ENSNLEG00000007079 ortholog_one2one 5 retrogenes
retro_nleu_1085, retro_nleu_1232, retro_nleu_1320, retro_nleu_752, retro_nleu_981,
Oryctolagus cuniculus ENSOCUG00000014147 ortholog_one2many 1 retrogene
retro_ocun_1595,
Otolemur garnettii ENSOGAG00000003523 ortholog_one2many 1 retrogene
retro_ogar_2724,
Pongo abelii ENSPPYG00000003764 ortholog_one2one 5 retrogenes
retro_pabe_1199, retro_pabe_1554, retro_pabe_1734, retro_pabe_1959, retro_pabe_461,
Pan troglodytes ENSPTRG00000004164 ortholog_one2one 3 retrogenes
retro_ptro_1253, retro_ptro_1595, retro_ptro_988,
Tupaia belangeri ENSTBEG00000002910 ortholog_one2many 1 retrogene
retro_tbel_2891,
Tarsius syrichta ENSTSYG00000004205 ortholog_one2many 1 retrogene
retro_tsyr_1581,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1024 85.87 54.88
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2. retro_mmul_1923 62.37 57.93
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Download FASTA sequences of all ENSMMUG00000005209 retrocopies