Parental gene: | CHORDC1, ENSPTRG00000004164 |
| Aliases: | None |
| Description: | Pan troglodytes cysteine and histidine-rich domain (CHORD) containing 1 (CHORDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001246422] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 11:87951137..87973993(-) |
>ENSPTRG00000004164
ATGGCCTTGCTGTGCTACAACCGGGGCTGCGGTCAGCGCTTCGATCCTGAGACCAATTCCGACGATGCTTGCACATACCA
CCCAGGTGTTCCGGTCTTTCACGATGCATTAAAGGGTTGGTCTTGCTGTAAGAGAAGAACAACTGATTTTTCTGATTTCT
TAAGCATTGTAGGCTGTACAAAAGGTAGACATAATAGTGAGAAGCCACCTGAGCCAGTCAAACCTGAAGTCAAGACTACT
GAGAAGAAGGAGCTATCTGAATTAAAACCCAAATTTCAGGAACACATCATTCAAGCCCCTAAGCCAGTAGAAGCAATAAA
AAGACCAAGCCCAGATGAACCAATGACAAATTTGGAATTAAAAATATCTGCCTCCCTAAAACAAGCACTTGATAAACTTA
AACTGTCATCAGGGAATGAAGAAAATAAGAAAGAAGAAGACAATGATGAAATTAAGATTGGGACCTCATGTAAGAATGGA
GGGTGTTCAAAGACATACCAGGGTCTAGAGAGTCTAGAAGAAGTCTGTGTATATCATTCTGGAGTACCTATTTTCCATGA
GGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAAGAGGGCTGTACAAAAG
GGAAACACATGTGGACTAAAAAAGATGCTGGGAAAAAAGTTGTTCCATGTAGACATGACTGGCATCAGACTGGAGGTGAA
GTTACCATTTCAGTATATGCTAAAAACTCACTTCCAGAACTTAGCCGAGTAGAAGCAAATAGCACATTGTTAAATGTGCA
TATTGTATTTGAAGGAGAGAAGGAATTTGATCAAAATGTGAAATTATGGGGTGTGATTGATGTAAAGCGAAGTTATGTAA
CTATGACTGCAACAAAGATTGAAATCACTATGAGAAAAGCTGAACCGATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCT
AAAAAGCAGGAAAAACAGAAAGATGACACAACAGATTGA
ATGGCCTTGCTGTGCTACAACCGGGGCTGCGGTCAGCGCTTCGATCCTGAGACCAATTCCGACGATGCTTGCACATACCA
CCCAGGTGTTCCGGTCTTTCACGATGCATTAAAGGGTTGGTCTTGCTGTAAGAGAAGAACAACTGATTTTTCTGATTTCT
TAAGCATTGTAGGCTGTACAAAAGGTAGACATAATAGTGAGAAGCCACCTGAGCCAGTCAAACCTGAAGTCAAGACTACT
GAGAAGAAGGAGCTATCTGAATTAAAACCCAAATTTCAGGAACACATCATTCAAGCCCCTAAGCCAGTAGAAGCAATAAA
AAGACCAAGCCCAGATGAACCAATGACAAATTTGGAATTAAAAATATCTGCCTCCCTAAAACAAGCACTTGATAAACTTA
AACTGTCATCAGGGAATGAAGAAAATAAGAAAGAAGAAGACAATGATGAAATTAAGATTGGGACCTCATGTAAGAATGGA
GGGTGTTCAAAGACATACCAGGGTCTAGAGAGTCTAGAAGAAGTCTGTGTATATCATTCTGGAGTACCTATTTTCCATGA
GGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAAGAGGGCTGTACAAAAG
GGAAACACATGTGGACTAAAAAAGATGCTGGGAAAAAAGTTGTTCCATGTAGACATGACTGGCATCAGACTGGAGGTGAA
GTTACCATTTCAGTATATGCTAAAAACTCACTTCCAGAACTTAGCCGAGTAGAAGCAAATAGCACATTGTTAAATGTGCA
TATTGTATTTGAAGGAGAGAAGGAATTTGATCAAAATGTGAAATTATGGGGTGTGATTGATGTAAAGCGAAGTTATGTAA
CTATGACTGCAACAAAGATTGAAATCACTATGAGAAAAGCTGAACCGATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCT
AAAAAGCAGGAAAAACAGAAAGATGACACAACAGATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 19 .77 RPM |
| SRP007412_cerebellum | 19 .18 RPM |
| SRP007412_heart | 21 .54 RPM |
| SRP007412_kidney | 20 .35 RPM |
| SRP007412_liver | 11 .39 RPM |
| SRP007412_testis | 47 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000000903 | ortholog_one2one | 4 retrogenes | |
| Echinops telfairi | ENSETEG00000013104 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000019389 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000110172 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000027396 | ortholog_one2one | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000017340 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005209 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000007079 | ortholog_one2one | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000014147 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000003523 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000003764 | ortholog_one2one | 5 retrogenes | |
| Tupaia belangeri | ENSTBEG00000002910 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000004205 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_988 | 90.00 | 65.96 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1253 | 90.75 | 99.70 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1595 | 91.30 | 55.42 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000004164 retrocopies