RetrogeneDB ID:

retro_nleu_1320

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397288.1:22870961..22871513(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CHORDC1
Ensembl ID:ENSNLEG00000007079
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1320
GATGAAATTACGATTGGGACCTCATGTAAGAATGGAGAGTGTTCAAAGACGTATTGGGGTCTAGAGAGTCTAGAAGAAGT
CTGTGTGTATCATTCTGGAGTGCCTATTTTCCATGAGGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACTTCTGATT
TTAATGCATTCTTAGCCCAAGAGGGCTGTTCAACAGGGAAACACATATGGGCTAAAAAGGATGCTGGGGAAAATGTTGTT
CCATGTAGACATGACTGGCATCAGACTGAAGGTGAAGTTACCATTTCAGTATATGCTAAAAATTCACTTCCAGAACTTAG
TCGAGTAGAAGTAAATAGCACGTTGTTAAATGTGCACATTGGATTTGAAGGAGAGAAGAAATTTGATCAAAATGTGAAAT
TATGGGGTATGATTGATATAAAGTGAAGTTACGTAACTACGACTGCAACAAAGATTGAGATCACTATGAGAAAAGCTGAA
CCGATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCCAAAAAGCAGGAAAAACAAAAAGACAACACAACAAAT

ORF - retro_nleu_1320 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.13 %
Parental protein coverage: 55.42 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalDEIKIGTSCKNGGCSKTYRGLESLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTKGKHMW
DEI.IGTSCKNG.CSKTY.GLESLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFN.FLAQEGC..GKH.W
RetrocopyDEITIGTSCKNGECSKTYWGLESLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNAFLAQEGCSTGKHIW
ParentalTKKDAGKKVVPCRHDWHQTGGEVTISVYAKNSVPELSRVEANSTLLNVHIVFEGEKEFDQNVKLWGVIDV
.KKDAG..VVPCRHDWHQT.GEVTISVYAKNS.PELSRVE.NSTLLNVHI.FEGEK.FDQNVKLWG.ID.
RetrocopyAKKDAGENVVPCRHDWHQTEGEVTISVYAKNSLPELSRVEVNSTLLNVHIGFEGEKKFDQNVKLWGMIDI
ParentalKRSYVTMTATKIEITMRKAEPMQWASLELPAAKKQEKQKDNTTD
K.SYVT.TATKIEITMRKAEPMQWASLELPAAKKQEKQKDNTT.
RetrocopyK*SYVTTTATKIEITMRKAEPMQWASLELPAAKKQEKQKDNTTN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1320 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 33 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000009034 retrocopies
Echinops telfairi ENSETEG000000131042 retrocopies
Felis catus ENSFCAG000000193891 retrocopy
Homo sapiens ENSG000001101723 retrocopies
Gorilla gorilla ENSGGOG000000273963 retrocopies
Loxodonta africana ENSLAFG000000173401 retrocopy
Macaca mulatta ENSMMUG000000052092 retrocopies
Nomascus leucogenys ENSNLEG00000007079 5 retrocopies
Oryctolagus cuniculus ENSOCUG000000141471 retrocopy
Otolemur garnettii ENSOGAG000000035231 retrocopy
Pongo abelii ENSPPYG000000037645 retrocopies
Pan troglodytes ENSPTRG000000041643 retrocopies
Tupaia belangeri ENSTBEG000000029101 retrocopy
Tarsius syrichta ENSTSYG000000042051 retrocopy



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