Parental gene:

CHORDC1, ENSOCUG00000014147

Aliases:None
Description:cysteine and histidine-rich domain (CHORD) containing 1 [Source:HGNC Symbol;Acc:14525]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:1:126670498..126687079(+)


>ENSOCUG00000014147
ATGGCTCTGCTGTGCTACAACCGGGGCTGCGGCCAGCGCTTCGATCCTGAGAATAACTCCGATGATGCCTGCACATACCA
CCCAGGTGTTCCAGTCTTTCATGATGCATTAAAGGGTTGGTCTTGCTGTAAGAGAAGAACAACTGATTTTTCTGATTTCT
TAAGCATTGTAGGCTGTACGAAAGGTAGGCATAATAATGAGAAGCCGCCTGAACCAGTCAAGCCTGAAGTGAAGACTACA
GAAAAGAAAGAACTATCTGAATTGAAACCCAAATTTCAGGAGCACATCATTCAAGCCCCTAAACCGGTAGAAACAATAAA
AAGGCCAAGTCCAGATGAACCAATGACAAATTTGGAATTAAAAATATCTGCCTCCCTAAAACAAGCACTTGATAAACTTA
AACTATCATCAGGGATTGAAGAGGAGAAGAAAGAAGAAGACAATGATGAAATTAAGATTGGAACCTCATGTAAAAATGGA
GGGTGTTCAAAGACATACCAGGGTCAAGAGAGTCTAGAAGAAGTCTGTGTATATCATTCTGGAGTACCTATTTTTCATGA
AGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACCTCTGACTTTAACACATTCTTAGCCCAGGAGGGCTGTACGACAG
GAAAACACTTGTGGACTAAAAAGGATGATGGTAAAAAAGTTGTTCCATGTAGACACGACTGGCATCAGACTGGAGGTGAA
GTCACCATTTCAGTATATGCTAAAAATTCACTTCCAGAACTTAGTCGAGTAGAAGCAAATAGTACATTGTTAAATGTTCA
CATTGTATTTGAAAGAGAGAAGGAATTTCATCAAAATGTGAAATTATGGGGTGTGATTGATGTAAAACGAAGTTATGTAA
CTATGACTGCAACAAAGATTGAAATCACCATGAGAAAAGCTGAACCTATGCAGTGGGCAAGCCTTGAACTGCCTATGACC
AAAAAGCCTGAAAAACAGAAAGATATTTCAGATTGA

Library Parental gene expression (RPM)
SRP017611_brain 21 .30 RPM
SRP017611_kidney 12 .26 RPM
SRP017611_liver 4 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000000903 ortholog_one2one 4 retrogenes
retro_cjac_2220, retro_cjac_2927, retro_cjac_4147, retro_cjac_815,
Echinops telfairi ENSETEG00000013104 ortholog_one2one 2 retrogenes
retro_etel_1713, retro_etel_1860,
Felis catus ENSFCAG00000019389 ortholog_one2many 1 retrogene
retro_fcat_137,
Homo sapiens ENSG00000110172 ortholog_one2one 3 retrogenes
retro_hsap_1452, retro_hsap_1903, retro_hsap_2252,
Gorilla gorilla ENSGGOG00000027396 ortholog_one2many 3 retrogenes
retro_ggor_1117, retro_ggor_1118, retro_ggor_1679,
Loxodonta africana ENSLAFG00000017340 ortholog_one2one 1 retrogene
retro_lafr_401,
Macaca mulatta ENSMMUG00000005209 ortholog_one2many 2 retrogenes
retro_mmul_1024, retro_mmul_1923,
Nomascus leucogenys ENSNLEG00000007079 ortholog_one2one 5 retrogenes
retro_nleu_1085, retro_nleu_1232, retro_nleu_1320, retro_nleu_752, retro_nleu_981,
Otolemur garnettii ENSOGAG00000003523 ortholog_one2one 1 retrogene
retro_ogar_2724,
Pongo abelii ENSPPYG00000003764 ortholog_one2one 5 retrogenes
retro_pabe_1199, retro_pabe_1554, retro_pabe_1734, retro_pabe_1959, retro_pabe_461,
Pan troglodytes ENSPTRG00000004164 ortholog_one2one 3 retrogenes
retro_ptro_1253, retro_ptro_1595, retro_ptro_988,
Tupaia belangeri ENSTBEG00000002910 ortholog_one2one 1 retrogene
retro_tbel_2891,
Tarsius syrichta ENSTSYG00000004205 ortholog_one2one 1 retrogene
retro_tsyr_1581,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1595 94.58 100.00
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Download FASTA sequences of all ENSOCUG00000014147 retrocopies