Parental gene:

CHORDC1, ENSG00000110172

Aliases:None
Description:cysteine and histidine-rich domain (CHORD) containing 1 [Source:HGNC Symbol;Acc:14525]
Organism:Human (Homo sapiens)
Coordinates:11:89934327..89956532(-)


>ENSG00000110172
ATGGCCTTGCTGTGCTACAACCGGGGCTGCGGTCAGCGCTTCGATCCTGAGACCAATTCCGACGATGCTTGCACATACCA
CCCAGGTGTTCCGGTCTTTCACGATGCATTAAAGGGTTGGTCTTGCTGTAAGAGAAGAACAACTGATTTTTCTGATTTCT
TAAGCATTGTAGGCTGTACAAAAGGTAGACATAATAGTGAGAAGCCACCTGAGCCAGTCAAACCTGAAGTCAAGACTACT
GAGAAGAAGGAGCTATGTGAATTAAAACCCAAATTTCAGGAACACATCATTCAAGCCCCTAAGCCAGTAGAAGCAATAAA
AAGACCAAGCCCAGATGAACCAATGACAAATTTGGAATTAAAAATATCTGCCTCCCTAAAACAAGCACTTGATAAACTTA
AACTGTCATCAGGGAATGAAGAAAATAAGAAAGAAGAAGACAATGATGAAATTAAGATTGGGACCTCATGTAAGAATGGA
GGGTGTTCAAAGACATACCAGGGTCTAGAGAGTCTAGAAGAAGTCTGTGTATATCATTCTGGAGTACCTATTTTCCATGA
GGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAAGAGGGCTGTACAAAAG
GGAAACACATGTGGACTAAAAAAGATGCTGGGAAAAAAGTTGTTCCATGTAGACATGACTGGCATCAGACTGGAGGTGAA
GTTACCATTTCAGTATATGCTAAAAACTCACTTCCAGAACTTAGCCGAGTAGAAGCAAATAGCACATTGTTAAATGTGCA
TATTGTATTTGAAGGAGAGAAGGAATTTGATCAAAATGTGAAATTATGGGGTGTGATTGATGTAAAGCGAAGTTATGTAA
CTATGACTGCAACAAAGATTGAAATCACTATGAGAAAAGCTGAACCGATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCT
AAAAAGCAGGAAAAACAAAAAGATGCCACAACAGATTGA

Library Parental gene expression (RPM)
bodymap2_liver 13 .41 RPM
bodymap2_lung 41 .60 RPM
bodymap2_breast 23 .44 RPM
bodymap2_adipose 13 .87 RPM
bodymap2_adrenal 24 .42 RPM
bodymap2_skeletal_muscle 14 .06 RPM
bodymap2_thyroid 76 .02 RPM
bodymap2_prostate 35 .14 RPM
bodymap2_colon 69 .74 RPM
bodymap2_testis 48 .02 RPM
bodymap2_brain 29 .25 RPM
bodymap2_heart 24 .07 RPM
bodymap2_white_blood_cells 41 .07 RPM
bodymap2_lymph_node 118 .83 RPM
bodymap2_ovary 51 .33 RPM
bodymap2_kidney 41 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000000903 ortholog_one2one 4 retrogenes
retro_cjac_2220, retro_cjac_2927, retro_cjac_4147, retro_cjac_815,
Echinops telfairi ENSETEG00000013104 ortholog_one2one 2 retrogenes
retro_etel_1713, retro_etel_1860,
Felis catus ENSFCAG00000019389 ortholog_one2many 1 retrogene
retro_fcat_137,
Gorilla gorilla ENSGGOG00000027396 ortholog_one2one 3 retrogenes
retro_ggor_1117, retro_ggor_1118, retro_ggor_1679,
Loxodonta africana ENSLAFG00000017340 ortholog_one2one 1 retrogene
retro_lafr_401,
Macaca mulatta ENSMMUG00000005209 ortholog_one2one 2 retrogenes
retro_mmul_1024, retro_mmul_1923,
Nomascus leucogenys ENSNLEG00000007079 ortholog_one2one 5 retrogenes
retro_nleu_1085, retro_nleu_1232, retro_nleu_1320, retro_nleu_752, retro_nleu_981,
Oryctolagus cuniculus ENSOCUG00000014147 ortholog_one2one 1 retrogene
retro_ocun_1595,
Otolemur garnettii ENSOGAG00000003523 ortholog_one2one 1 retrogene
retro_ogar_2724,
Pongo abelii ENSPPYG00000003764 ortholog_one2one 5 retrogenes
retro_pabe_1199, retro_pabe_1554, retro_pabe_1734, retro_pabe_1959, retro_pabe_461,
Pan troglodytes ENSPTRG00000004164 ortholog_one2one 3 retrogenes
retro_ptro_1253, retro_ptro_1595, retro_ptro_988,
Tupaia belangeri ENSTBEG00000002910 ortholog_one2one 1 retrogene
retro_tbel_2891,
Tarsius syrichta ENSTSYG00000004205 ortholog_one2one 1 retrogene
retro_tsyr_1581,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1452 89.55 65.96
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2. retro_hsap_1903 91.64 99.70
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3. retro_hsap_2252 90.22 58.79
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Download FASTA sequences of all ENSG00000110172 retrocopies