RetrogeneDB ID: | retro_mmul_1923 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:156941474..156942035(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHORDC1 | ||
Ensembl ID: | ENSMMUG00000005209 | ||
Aliases: | None | ||
Description: | cysteine and histidine-rich domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001244685] |
Percent Identity: | 62.37 % |
Parental protein coverage: | 57.93 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MALLCYNR-GCGQRFDPETNSDDACTYHPGVPVFH-DALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEK |
M.LL..N..GC.Q.F....NS.DAC..HP.VPVF..D.L.GWS.CKR.TTDFSDFL...GCT.G...SEK | |
Retrocopy | MSLLSNNQ<GCSQCFNLGANSNDACSSHPDVPVFV<DILEGWSHCKRSTTDFSDFLCVAGCTTGKRKSEK |
Parental | PPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVE-AIKRPSPDEPMTNLEL-KISASLKQALDKLKLS |
.PEPVKPEVKTTEKKEL.E.KPKFQE..IQA..P.E.....PSP..P.TN..L.K.SA.LKQALD..KLS | |
Retrocopy | SPEPVKPEVKTTEKKELFESKPKFQELVIQASNPAE>XXXXPSPNKPVTNSKL>KASACLKQALD--KLS |
Parental | SGNEEDKKEEDNDEIKIGTSCKNGGCSKTYRGLESLEEVCVYHSGVPIFHEGMK |
.GNE.DKK.ED..EIKIG.S..NGGCSK...G....E..CVYHS...IFH..MK | |
Retrocopy | *GNEYDKK-EDSEEIKIGNSRENGGCSKISQGPQNPE*ACVYHSVAAIFHKEMK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 22 .19 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 24 .83 RPM |
SRP007412_cerebellum | 0 .00 RPM | 16 .27 RPM |
SRP007412_heart | 0 .00 RPM | 15 .43 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .32 RPM |
SRP007412_liver | 0 .00 RPM | 4 .16 RPM |
SRP007412_testis | 0 .00 RPM | 37 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000000903 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000013104 | 2 retrocopies | |
Felis catus | ENSFCAG00000019389 | 1 retrocopy | |
Homo sapiens | ENSG00000110172 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000027396 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000017340 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005209 | 2 retrocopies |
retro_mmul_1024, retro_mmul_1923 ,
|
Nomascus leucogenys | ENSNLEG00000007079 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014147 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003523 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003764 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000004164 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000002910 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004205 | 1 retrocopy |