RetrogeneDB ID: | retro_etel_1955 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_319511:8210..8577(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB10 | ||
Ensembl ID: | ENSETEG00000017154 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa [Source:HGNC Symbol;Acc:7696] |
Percent Identity: | 76.38 % |
Parental protein coverage: | 99.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | FIEQQHAKNKTYYYHRQFRRVPDITECQEKDVLCMFEAEMQWRRDYKVDQEIANIMQERMKACQQREGQS |
FIEQQHAKNKT.YY.RQF..VPDITECQEKD.LC.FEA.MQW.RDYKVDQEIA.IMQER.KACQQREG.S | |
Retrocopy | FIEQQHAKNKTCYYQRQFHHVPDITECQEKDALCVFEAKMQWQRDYKVDQEIASIMQERLKACQQREGES |
Parental | YVQNCARELEQFAQVSK-AYQDRYQDLGAHYSARKCLAKQKQRMLAEQKAAKAAAEA |
YVQNCARE..Q........YQD....LGAHYSA..CLAKQK.RMLAEQKAAK.AA.A | |
Retrocopy | YVQNCAREFAQVQGLPR>GYQD----LGAHYSAPECLAKQK*RMLAEQKAAKEAAAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019476 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000017154 | 1 retrocopy |
retro_etel_1955 ,
|
Felis catus | ENSFCAG00000011738 | 1 retrocopy | |
Homo sapiens | ENSG00000140990 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009367 | 2 retrocopies | |
Latimeria chalumnae | ENSLACG00000013152 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029268 | 1 retrocopy | |
Mus musculus | ENSMUSG00000040048 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008867 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006974 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007618 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000014568 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030328 | 1 retrocopy |