RetrogeneDB ID: | retro_hsap_3801 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:141051776..141052081(+) | ||
Located in intron of: | ENSG00000261115 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000261624 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB10 | ||
Ensembl ID: | ENSG00000140990 | ||
Aliases: | NDUFB10, PDSW | ||
Description: | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa [Source:HGNC Symbol;Acc:7696] |
Percent Identity: | 56.48 % |
Parental protein coverage: | 73.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MPDSWDKDVYPEPP--RRTPVQPNP-IVYMMKAFDLIVDRPVTLVREFIERQHAKNRYYYYHRQYRRVPD |
MP.SWDKDVYP..P..R..P..PNP.I.Y.MKAFDL........VRE...R.....RYYYYH..YR..PD | |
Retrocopy | MPESWDKDVYPKSPCPRCRPCSPNP<ITYLMKAFDLLM----AFVRESL*RGSM*RRYYYYHWEYRHMPD |
Parental | ITECKEEDIMCMYEAEMQWKRDYKVDQEIINIMQDRLK |
I.ECK.ED..CM..AEMQW.RD.K..QEI....Q.RLK | |
Retrocopy | IIECK-EDVLCMFGAEMQWRRDHKISQEIVDLIQERLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 30 .73 RPM |
bodymap2_adrenal | 0 .08 RPM | 35 .25 RPM |
bodymap2_brain | 0 .00 RPM | 40 .79 RPM |
bodymap2_breast | 0 .00 RPM | 41 .25 RPM |
bodymap2_colon | 0 .00 RPM | 42 .15 RPM |
bodymap2_heart | 0 .02 RPM | 105 .87 RPM |
bodymap2_kidney | 0 .00 RPM | 61 .23 RPM |
bodymap2_liver | 0 .00 RPM | 39 .59 RPM |
bodymap2_lung | 0 .00 RPM | 24 .95 RPM |
bodymap2_lymph_node | 0 .00 RPM | 33 .28 RPM |
bodymap2_ovary | 0 .00 RPM | 23 .77 RPM |
bodymap2_prostate | 0 .00 RPM | 60 .86 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 113 .04 RPM |
bodymap2_testis | 0 .00 RPM | 37 .35 RPM |
bodymap2_thyroid | 0 .00 RPM | 35 .18 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 31 .78 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2578 |
Gorilla gorilla | retro_ggor_2555 |
Pongo abelii | retro_pabe_3106 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019476 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000017154 | 1 retrocopy | |
Felis catus | ENSFCAG00000011738 | 1 retrocopy | |
Homo sapiens | ENSG00000140990 | 2 retrocopies |
retro_hsap_1573, retro_hsap_3801 ,
|
Gorilla gorilla | ENSGGOG00000009367 | 2 retrocopies | |
Latimeria chalumnae | ENSLACG00000013152 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029268 | 1 retrocopy | |
Mus musculus | ENSMUSG00000040048 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008867 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006974 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007618 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000014568 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030328 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |