RetrogeneDB ID: | retro_sscr_689 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 2:153735474..153735999(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB10 | ||
Ensembl ID: | ENSSSCG00000030328 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa [Source:HGNC Symbol;Acc:7696] |
Percent Identity: | 51.65 % |
Parental protein coverage: | 98.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | DSWDKDVYPEPPRRTPA-PAPQTSLPNPVTYLTKIFDLLVDRPVTLAREFIEQQHAKNRYYYYHREFRRV |
D.W.KDV.PEPPRRT...P..QT..PNP.T..TK.FDLL.D..VTL..E...........YY..RE..RV | |
Retrocopy | DGWAKDVHPEPPRRTTG<PHWQTLPPNPRTCFTKAFDLLMDQLVTLTTE-SRAAALREHLYYHPREVCRV |
Parental | PDITECEEKDILCMFEAEMQWRRDYKV-DQEIVNIIQ-ERLKACQQREG-ESYRQNCAKELEQFTQVSKA |
.D...C.EKDIL.M..AE....R..KV...E...IIQ..R.KA.Q.R.G..SYRQ.CAK.LE.......A | |
Retrocopy | ADFPGCKEKDILWMSGAETPRGRGCKV<HHEVIGIIQ<GRPKAGQRRGG<QSYRQDCAKALEPLARAAWA |
Parental | FQ----DRYSDLG-AHYSARKCLAKQKQRMLAERKAAKEAAA |
.Q....DR..D.G.AH.SA.KCLAK.KQR.LAER.A...AAA | |
Retrocopy | YQPHCHDRAEDHG>AHWSAGKCLAKRKQRTLAERNATNTAAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .27 RPM | 94 .50 RPM |
SRP014902_testis | 0 .42 RPM | 39 .04 RPM |
SRP018288_heart | 0 .00 RPM | 64 .36 RPM |
SRP018288_kidney | 0 .00 RPM | 38 .02 RPM |
SRP018288_liver | 0 .00 RPM | 26 .70 RPM |
SRP018288_lung | 0 .00 RPM | 40 .22 RPM |
SRP018856_adipose | 0 .12 RPM | 37 .59 RPM |
SRP035408_brain | 0 .03 RPM | 46 .81 RPM |
SRP035408_liver | 0 .00 RPM | 41 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019476 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000017154 | 1 retrocopy | |
Felis catus | ENSFCAG00000011738 | 1 retrocopy | |
Homo sapiens | ENSG00000140990 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009367 | 2 retrocopies | |
Latimeria chalumnae | ENSLACG00000013152 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029268 | 1 retrocopy | |
Mus musculus | ENSMUSG00000040048 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008867 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006974 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007618 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000014568 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030328 | 1 retrocopy |
retro_sscr_689 ,
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