RetrogeneDB ID: | retro_rnor_1056 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 14:63783072..63783461(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ndufb10 | ||
Ensembl ID: | ENSRNOG00000014568 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase [Source:RefSeq peptide;Acc:NP_001102913] |
Percent Identity: | 57.14 % |
Parental protein coverage: | 73.86 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | TLVREFIEQQHAKNRTYYYHRQYRRVPDITECKEGDVICIYEAEMQWRRDFKVDQEIINIIQERLKACQQ |
T..RE..E.QHA.N.T..YH.....V.DI...KEGD..CI.EA.M..RRD.KVDQ..I.I.QERLK.CQQ | |
Retrocopy | TSLREPFEWQHANN*TCCYHQ**GCVQDIAKYKEGDILCIFEAGMHLRRD*KVDQNVIRISQERLKSCQQ |
Parental | REGESAL-QNCAKELEQFTQVSKAYQDRYQDLGAYY-SARKCLAKQKQRML-EERKAAKETAA |
.EG.....Q...K.LEQFT.V.K.Y..R..DLGA.Y.SARKCL.KQKQ.ML...R.AA.ET.A | |
Retrocopy | KEGANTS<QIRVKALEQFTKVDKLYHNRFYDLGALY>SARKCLRKQKQGML<GKRMAAEETVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 52 .63 RPM |
SRP017611_kidney | 0 .00 RPM | 85 .13 RPM |
SRP017611_liver | 0 .00 RPM | 40 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_2566 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019476 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000017154 | 1 retrocopy | |
Felis catus | ENSFCAG00000011738 | 1 retrocopy | |
Homo sapiens | ENSG00000140990 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009367 | 2 retrocopies | |
Latimeria chalumnae | ENSLACG00000013152 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029268 | 1 retrocopy | |
Mus musculus | ENSMUSG00000040048 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008867 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006974 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007618 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000014568 | 1 retrocopy |
retro_rnor_1056 ,
|
Sus scrofa | ENSSSCG00000030328 | 1 retrocopy |