RetrogeneDB ID: | retro_mmul_2218 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:35652698..35653081(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3121 | ||
Ensembl ID: | ENSMMUG00000029268 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase [Source:RefSeq peptide;Acc:NP_001191687] |
Percent Identity: | 73.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EFIERQHAKNRYYYYHRQYRRVPDITECKENDILCLFEAE-MQWRRDYQVDREIVNIIQARIKACQQREG |
E..E.QHAKNRYYYYHRQYRRVPDITE.KE.DILC..EAE.MQ.RRDY.VD.EIV.IIQ.R.KACQ..EG | |
Retrocopy | EVPEWQHAKNRYYYYHRQYRRVPDITERKE-DILCIYEAE<MQRRRDYKVDQEIVSIIQERLKACQ*SEG |
Parental | HNYKQNCSKEVEQFTEVAKAYQDRYQDLGAHYSARKCLAKQKERMLEERKAAREAAAATS |
.N..QN..KEV.QFT.VA.AYQDR.Q.LGAH.SA.KC.AKQK.RML.ER.AA..AAAA.S | |
Retrocopy | DNNRQNRAKEVQQFTQVAPAYQDR*QALGAHCSAGKCRAKQKQRMLGERAAAKAAAAAAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 41 .57 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 45 .54 RPM |
SRP007412_cerebellum | 0 .13 RPM | 38 .10 RPM |
SRP007412_heart | 0 .00 RPM | 139 .74 RPM |
SRP007412_kidney | 0 .23 RPM | 80 .51 RPM |
SRP007412_liver | 0 .04 RPM | 77 .27 RPM |
SRP007412_testis | 0 .00 RPM | 14 .25 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1573 |
Pan troglodytes | retro_ptro_1060 |
Gorilla gorilla | retro_ggor_1198 |
Pongo abelii | retro_pabe_1297 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019476 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000017154 | 1 retrocopy | |
Felis catus | ENSFCAG00000011738 | 1 retrocopy | |
Homo sapiens | ENSG00000140990 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009367 | 2 retrocopies | |
Latimeria chalumnae | ENSLACG00000013152 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029268 | 1 retrocopy |
retro_mmul_2218 ,
|
Mus musculus | ENSMUSG00000040048 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008867 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006974 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007618 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000014568 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030328 | 1 retrocopy |