RetrogeneDB ID:

retro_fcat_307

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:A2:7439755..7440123(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000011738
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_307
GAGCCGCAGCATGCAAAGTACAGGTATTACCGCTTGCACGGGGAATTCTGCGGGGGGCGGGGCGGGGCTGAGTGCCGGCA
AAAGGAAGTCTGGTGCGCGTTTGAAGCAGAGATGTAATGGACAAGAAACTACCAAGTCAATCGTGAACTTGACAACATCA
CCCACGAAAGGCTGACAGCCTGTCCCCAGAGGGAAGGCGAGAGCTACAGGCAGAATTGTCCAAGCAGCTGAAGCAGTGCA
TCCGGGTGGCCCAAGGCCTCCCAGGGCTCCAGGGCTACCTTGGGACCCATTATTCTGCCAGGAAGCGCCTGGCAAAGCAG
AAGCAGGGCATGCTGGCAAAGGGGAAAGCAGCTAATAAGGCCGCTGCC

ORF - retro_fcat_307 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 56.45 %
Parental protein coverage: 69.89 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalERQHAKNRYYYYHREFRRVPDITECQEKDVLCMFEAEMQWRRDYKVDQEIVNIIQERLKACQQREGESYR
E.QHAK.RYY..H.EF.......EC..K.V.C.FEAEM.W.R.Y.V..E..NI..ERL.AC.QREGESYR
RetrocopyEPQHAKYRYYRLHGEFCGGRGGAECRQKEVWCAFEAEM*WTRNYQVNRELDNITHERLTACPQREGESYR
ParentalENC-AKEMEQFAQVAKAYQDRYHDLGAHYSARKCLAKQKQRMLAERKAAKEAAA
.NC..K...Q...VA.........LG.HYSARK.LAKQKQ.MLA..KAA..AAA
RetrocopyQNC<SKQLKQCIRVAQGLPGLQGYLGTHYSARKRLAKQKQGMLAKGKAANKAAA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 25 .82 RPM
SRP017611_kidney 0 .00 RPM 69 .98 RPM
SRP017611_liver 0 .00 RPM 30 .53 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_307 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_307 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 17 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000194761 retrocopy
Echinops telfairi ENSETEG000000171541 retrocopy
Felis catus ENSFCAG00000011738 1 retrocopy
retro_fcat_307 ,
Homo sapiens ENSG000001409902 retrocopies
Gorilla gorilla ENSGGOG000000093672 retrocopies
Latimeria chalumnae ENSLACG000000131521 retrocopy
Macaca mulatta ENSMMUG000000292681 retrocopy
Mus musculus ENSMUSG000000400481 retrocopy
Nomascus leucogenys ENSNLEG000000088671 retrocopy
Pongo abelii ENSPPYG000000069742 retrocopies
Pan troglodytes ENSPTRG000000076182 retrocopies
Rattus norvegicus ENSRNOG000000145681 retrocopy
Sus scrofa ENSSSCG000000303281 retrocopy



Copyright © RetrogeneDB 2014-2017