RetrogeneDB ID: | retro_etel_1979 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_321500:71965..72391(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NXT2 | ||
Ensembl ID: | ENSETEG00000008002 | ||
Aliases: | None | ||
Description: | nuclear transport factor 2-like export factor 2 [Source:HGNC Symbol;Acc:18151] |
Percent Identity: | 62.68 % |
Parental protein coverage: | 72.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QVVTQPLPEHALGTPGTMSVDFKTYVDQACRAAEEFVHIYYETMDKRRRVLPRLYLDTATLLWNGNVVTG |
.V...P........P...SVDFKTYVDQACRAAEEFV.IYY..MDKRRR.LPR.Y..TATL.WNGN.V.G | |
Retrocopy | EVEETPWQRSSPAEPEMSSVDFKTYVDQACRAAEEFVAIYYTAMDKRRRALPRPYVGTATLVWNGNAVAG |
Parental | MDGITNFFEMLPSSEFQINMLDCQPVHEQATPSQSTVLVVTSGTVKFDGSHPHYYNQNFLLTAQSTPNQT |
......FFEML.SSEFQIN..D..PVH..ATPSQ.TVLVV..GTVKF.G......NQNF.LTAQ..P..T | |
Retrocopy | QESLSEFFEMLSSSEFQINVIDRHPVHDEATPSQTTVLVVIGGTVKFEGNKQRDFNQNFILTAQASPSNT |
Parental | VW |
VW | |
Retrocopy | VW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |