RetrogeneDB ID: | retro_itri_141 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393430.1:2243465..2243888(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000026331 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NXT2 | ||
Ensembl ID: | ENSSTOG00000005243 | ||
Aliases: | None | ||
Description: | nuclear transport factor 2-like export factor 2 [Source:HGNC Symbol;Acc:18151] |
Percent Identity: | 75.18 % |
Parental protein coverage: | 99.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDFKMYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNVVTGLDALSNFFEMLPSSEFQVN |
MDFK.YVDQACRAAEEFVN.YY.TMD.RRR.L.RLY...ATL.WNGN.V.G...LS.FFEMLPSSEFQ.N | |
Retrocopy | MDFKTYVDQACRAAEEFVNVYYTTMDNRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQIN |
Parental | MLDCQPVHEQATQSQTTVLVVTSGIVKFDGNKQHYFNQNFLLTAQSTPNSTVWKIASDCFRFQDWAS |
..DCQPVH..AT.SQTTVLVV..G.VKF.GNKQ..FNQNF.L.AQ..P..TVWKIASDCFRFQDWAS | |
Retrocopy | VVDCQPVHDEATPSQTTVLVVICGTVKFEGNKQRDFNQNFILSAQASPSNTVWKIASDCFRFQDWAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |