RetrogeneDB ID: | retro_ocun_210 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 4:13605935..13606358(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000025924 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NXT2 | ||
Ensembl ID: | ENSOCUG00000008261 | ||
Aliases: | None | ||
Description: | nuclear transport factor 2-like export factor 2 [Source:HGNC Symbol;Acc:18151] |
Percent Identity: | 76.81 % |
Parental protein coverage: | 70.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SVDFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNVVTGLDSLSNFFEMLPSSEFQV |
SVDFKTYVDQACRAAEEFVN.YY.TMDKRRR.L.RLY...ATL.WNGN.V.G..SLS.FFEMLPSSEFQ. | |
Retrocopy | SVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGHESLSEFFEMLPSSEFQI |
Parental | NMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAHSTPTSTVWKIASDCFRFQDWAS |
...DCQPVH..AT.SQTTVLVV..GTVKF.GNKQ..FNQNF.LTA...P..TVWKIASDCFRFQDWA. | |
Retrocopy | SVVDCQPVHDEATPSQTTVLVVICGTVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDWAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .75 RPM | 3 .09 RPM |
SRP017611_kidney | 5 .07 RPM | 4 .26 RPM |
SRP017611_liver | 1 .77 RPM | 0 .77 RPM |