RetrogeneDB ID: | retro_rnor_2365 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:61352668..61352982(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nxt2 | ||
Ensembl ID: | ENSRNOG00000019168 | ||
Aliases: | Nxt2, RGD1560204 | ||
Description: | NTF2-related export protein 2 [Source:UniProtKB/Swiss-Prot;Acc:B2GV77] |
Percent Identity: | 86.79 % |
Parental protein coverage: | 73.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAMAVDFKMYVDQACR-AAEEFVNIYYETMDKRRHALVRLYLDKATLIWNGNVVTGLEALANFFEMLPSS |
MAMAV.FKMYVDQAC..AAEE.VNIYYETMDKR.HALVRL.L.KATLIWNGNVVTGLEALANFFE.LPS. | |
Retrocopy | MAMAVGFKMYVDQACK<AAEELVNIYYETMDKR*HALVRLCLNKATLIWNGNVVTGLEALANFFETLPSR |
Parental | EFQINMLDCQPVHEQATQYQTTVLVVTSGVVKFDGN |
EFQINML.CQPVHEQ.T..QTTVLVVTSGVVKF.GN | |
Retrocopy | EFQINMLACQPVHEQTTKCQTTVLVVTSGVVKFEGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .14 RPM |
SRP017611_liver | 0 .00 RPM | 6 .52 RPM |