Parental gene:

NXT2, ENSCPOG00000003310

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_46:11399082..11402121(-)


>ENSCPOG00000003310
GATTTTAAAACTTACGTAGACCAAGCATGCAAAGCTGCTGAGGAATTTATCAATATTTATTATGAGACAATGGACAAGAG
AAGAAGGGCACTTATCAGGCTTTATCTGGACAAGGCCACTTTAGTATGGAATGGAAATGTTGTTACTGGGCTGGACGCCC
TAAATAATTTTTTTGAGATGTTGCCTTCTAGTGAGTTCCAGGTTAATATGTTAGACTGCCAGCCAGTGCATGAACAAGCT
ACGCAGTCCCAGAGTACAGTTCTTGTGGTGACCAGTGGAACTGTGAAATTTGATGGAAACAGACAGCACTACTTTAACCA
AAACTTCCTGCTGACTGCGCAAGTCAGTCATAACAGCACCGTGTGGAAGATTGCAAGTGATTGCTTCCGTTTTCAAGATT
GGGCTAAT

Library Parental gene expression (RPM)
SRP017611_liver 0 .57 RPM
SRP017611_kidney 0 .31 RPM
SRP017611_brain 0 .06 RPM
SRP040447_lung 0 .45 RPM
SRP040447_skeletal_muscle 0 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017999 ortholog_one2one 1 retrogene
retro_amel_59,
Bos taurus ENSBTAG00000020739 ortholog_one2one 1 retrogene
retro_btau_118,
Canis familiaris ENSCAFG00000028574 ortholog_one2one 1 retrogene
retro_cfam_1137,
Callithrix jacchus ENSCJAG00000007369 ortholog_one2one 1 retrogene
retro_cjac_98,
Dipodomys ordii ENSDORG00000010714 ortholog_one2one 1 retrogene
retro_dord_2,
Echinops telfairi ENSETEG00000008002 ortholog_one2one 2 retrogenes
retro_etel_1926, retro_etel_1979,
Felis catus ENSFCAG00000002240 ortholog_one2one 1 retrogene
retro_fcat_20,
Homo sapiens ENSG00000101888 ortholog_one2one 1 retrogene
retro_hsap_80,
Gorilla gorilla ENSGGOG00000013593 ortholog_one2one 1 retrogene
retro_ggor_67,
Loxodonta africana ENSLAFG00000007116 ortholog_one2one 1 retrogene
retro_lafr_124,
Microcebus murinus ENSMICG00000014511 ortholog_one2one 3 retrogenes
retro_mmur_149, retro_mmur_1531, retro_mmur_25,
Myotis lucifugus ENSMLUG00000000631 ortholog_one2one 3 retrogenes
retro_mluc_1513, retro_mluc_160, retro_mluc_473,
Macaca mulatta ENSMMUG00000013204 ortholog_one2one 1 retrogene
retro_mmul_140,
Monodelphis domestica ENSMODG00000021343 ortholog_one2many 1 retrogene
retro_mdom_1611,
Mustela putorius furo ENSMPUG00000003973 ortholog_one2one 1 retrogene
retro_mputfur_74,
Mus musculus ENSMUSG00000042271 ortholog_one2one 1 retrogene
retro_mmus_12,
Oryctolagus cuniculus ENSOCUG00000008261 ortholog_one2one 1 retrogene
retro_ocun_210,
Procavia capensis ENSPCAG00000008006 ortholog_one2one 1 retrogene
retro_pcap_9,
Pongo abelii ENSPPYG00000020625 ortholog_one2one 1 retrogene
retro_pabe_101,
Pteropus vampyrus ENSPVAG00000006149 ortholog_one2one 1 retrogene
retro_pvam_14,
Rattus norvegicus ENSRNOG00000019168 ortholog_one2one 2 retrogenes
retro_rnor_2365, retro_rnor_254,
Sorex araneus ENSSARG00000009307 ortholog_one2one 1 retrogene
retro_sara_4,
Sus scrofa ENSSSCG00000012581 ortholog_one2one 1 retrogene
retro_sscr_8,
Ictidomys tridecemlineatus ENSSTOG00000005243 ortholog_one2one 3 retrogenes
retro_itri_1138, retro_itri_141, retro_itri_793,
Tarsius syrichta ENSTSYG00000001924 ortholog_one2one 1 retrogene
retro_tsyr_42,
Tursiops truncatus ENSTTRG00000005115 ortholog_one2one 1 retrogene
retro_ttru_19,
Vicugna pacos ENSVPAG00000007314 ortholog_one2one 1 retrogene
retro_vpac_624,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_29 73.53 100.00
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Download FASTA sequences of all ENSCPOG00000003310 retrocopies