RetrogeneDB ID: | retro_fcat_1037 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:67831860..67832653(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAP1L1 | ||
Ensembl ID: | ENSFCAG00000000279 | ||
Aliases: | None | ||
Description: | nucleosome assembly protein 1-like 1 [Source:HGNC Symbol;Acc:7637] |
Percent Identity: | 75.28 % |
Parental protein coverage: | 68.29 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | KEQSELDQDLDDVEEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKR |
..QSELDQDLDDVEE.EEE.TG.ETKIKA.QLTVQMMQNP.I...L...LDGL.ETP.GYIE.LPRVVKR | |
Retrocopy | QKQSELDQDLDDVEEIEEE-TGKETKIKACQLTVQMMQNPHIIVTLEIKLDGLIETPAGYIENLPRVVKR |
Parental | RVNALKNLQ-VKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRF-EIINAIYEPTEEECEWKPDEEDEISE |
RVN.LKN...V.CA.IEAKFYEE...LERKYAVL..PLFD....EIIN..YEP.EE.CE.K.DEE.EI.. | |
Retrocopy | RVNTLKNGK<VRCAKIEAKFYEEADGLERKYAVLCWPLFDSDL<EIINPTYEPMEE-CE*KLDEENEIL* |
Parental | ELK-EKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFV |
.LK..KAK..DEKKDEEKED.K.IPEFW.TVFKNVDL..DMVQE.DEPILKHLKDIKVKFSD..QP..FV | |
Retrocopy | KLK<RKAKNKDEKKDEEKEDSKIIPEFWVTVFKNVDLFNDMVQEYDEPILKHLKDIKVKFSDTDQPLTFV |
Parental | LEFHFEPNEYFTN-EVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTI |
.EFHFEP.E.FT..EV.TKTY.M.SE.DDSDPFS.DGPEIMGCTGCQIDW..GKNVTLKTI | |
Retrocopy | *EFHFEPSEHFTS>EVFTKTYTMKSEADDSDPFSLDGPEIMGCTGCQIDWENGKNVTLKTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 147 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 126 .55 RPM |
SRP017611_liver | 0 .00 RPM | 43 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020908 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000001115 | 1 retrocopy | |
Felis catus | ENSFCAG00000000279 | 1 retrocopy |
retro_fcat_1037 ,
|
Homo sapiens | ENSG00000187109 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000003883 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000013702 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000015583 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020456 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000017474 | 1 retrocopy | |
Mus musculus | ENSMUSG00000058799 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004682 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000010319 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000005240 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000003890 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007290 | 3 retrocopies |