RetrogeneDB ID: | retro_nleu_2085 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397327.1:8507893..8508921(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAP1L1 | ||
Ensembl ID: | ENSNLEG00000004682 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.42 % |
Parental protein coverage: | 88.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MADIDNKEQSELDQDLDDVEEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESL |
MADIDNKEQS.LDQDLDD...VEEE.T.EETKIKA.QLTVQMMQNPQILAALQERLDGL.ETPT.YIESL | |
Retrocopy | MADIDNKEQSKLDQDLDDAKKVEEE-TDEETKIKAHQLTVQMMQNPQILAALQERLDGLIETPTRYIESL |
Parental | PRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEED |
PRVVK.RVNALKNL.VKCAQIEAKFYEEVH.LERKYAVL.QPLFDK.FEIINAIY.PTEEE..W.PDEED | |
Retrocopy | PRVVKKRVNALKNL*VKCAQIEAKFYEEVHNLERKYAVLCQPLFDKQFEIINAIYKPTEEE--WGPDEED |
Parental | EISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPM |
EISE....................KGIPEFWLTVFKNVDL.SDM.QEH.EPILK.LKDIKVKFSD.GQPM | |
Retrocopy | EISEXXXXXXXXXXXXXXXXXXXSKGIPEFWLTVFKNVDLFSDMFQEHNEPILKYLKDIKVKFSDDGQPM |
Parental | SFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWK-KGKNVTLKTIKKKQKH |
SFVLEFHFE.NEYF.NEVLTKTY.MRSEPDDSDPF.FDGPEIMG..GCQIDWK.K.KN..LKTIKKKQKH | |
Retrocopy | SFVLEFHFEVNEYFINEVLTKTYSMRSEPDDSDPFYFDGPEIMGFIGCQIDWK<KRKNIILKTIKKKQKH |
Parental | KGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEA |
KGRGTV.TVTKTVSNDSFFNFFAPPEV.ESGDLD.DA..ILAADFEIGHFL.E.IIP.SVLYFTGEA | |
Retrocopy | KGRGTVSTVTKTVSNDSFFNFFAPPEVSESGDLDADAKTILAADFEIGHFLLECIIPGSVLYFTGEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020908 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000001115 | 1 retrocopy | |
Felis catus | ENSFCAG00000000279 | 1 retrocopy | |
Homo sapiens | ENSG00000187109 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000003883 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000013702 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000015583 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020456 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000017474 | 1 retrocopy | |
Mus musculus | ENSMUSG00000058799 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004682 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010841 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010319 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000005240 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000003890 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007290 | 3 retrocopies |