RetrogeneDB ID: | retro_fcat_1068 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:119179367..119180098(-) | ||
Located in intron of: | ENSFCAG00000030428 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GOT2 | ||
Ensembl ID: | ENSFCAG00000025552 | ||
Aliases: | None | ||
Description: | glutamic-oxaloacetic transaminase 2, mitochondrial [Source:HGNC Symbol;Acc:4433] |
Percent Identity: | 69.05 % |
Parental protein coverage: | 57.21 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | KTCGFDFTGAIEDISKMPQQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKN-NLFAFFDMAYQGFASGD |
KTCGFDFT...EDISKMPQQSVLL.H..AHNP..VDP..E..KEIAT.V.K..NL..FFDMAYQ.FAS.D | |
Retrocopy | KTCGFDFTSTMEDISKMPQQSVLL-HTYAHNPVEVDPHSEK*KEIATAVTKR<NLSTFFDMAYQDFASSD |
Parental | GNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDADEAKRVESQLKILIRPMYSNPPING |
G.KDA.AV.HF.E.GINVCLCQSY.KNMGLYG..VG.FTVVCKDADE...VESQ.K.LI.P.YSNPP.NG | |
Retrocopy | GTKDA*AVHHFTEEGINVCLCQSYTKNMGLYGKCVGDFTVVCKDADEVRGVESQMKTLIHPVYSNPPLNG |
Parental | AR-IASTILT-SPDLRKQWLQ-EVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQ |
A...AST.LT...D..KQWL..E...MA..IISM...LVSNLKKE..SHN.QHI.DQ.G.FCFTGLKP.Q | |
Retrocopy | AQ<VASTTLT<HLDFQKQWLL>EAQVMASCIISMQIRLVSNLKKEDFSHNGQHIPDQTGIFCFTGLKPKQ |
Parental | VERLTKEFS-IYMTKDGRISVAGVT-SGNVGYLAHAIHQVTK |
VE.LTKEFS.IYMTK...I.VA.....G..GYLAH.IH.VTK | |
Retrocopy | VEQLTKEFS<IYMTKVSLIFVARII<LGQLGYLAHDIHSVTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 116 .38 RPM |
SRP017611_kidney | 0 .10 RPM | 87 .70 RPM |
SRP017611_liver | 0 .00 RPM | 122 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017346 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000008357 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011234 | 1 retrocopy | |
Equus caballus | ENSECAG00000016504 | 1 retrocopy | |
Felis catus | ENSFCAG00000025552 | 3 retrocopies |
retro_fcat_1068 , retro_fcat_1888, retro_fcat_381,
|
Gorilla gorilla | ENSGGOG00000005767 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000006000 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004862 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007413 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000011782 | 1 retrocopy |