RetrogeneDB ID: | retro_fcat_1888 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | JH409009.1:129429..130318(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GOT2 | ||
Ensembl ID: | ENSFCAG00000025552 | ||
Aliases: | None | ||
Description: | glutamic-oxaloacetic transaminase 2, mitochondrial [Source:HGNC Symbol;Acc:4433] |
Percent Identity: | 71.19 % |
Parental protein coverage: | 69.3 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MALLHTGRVLSGVAAAFHPGLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDD |
MA.LH...VLS.VA..FH.GLAA..SARASSWWT.V.MGPPDPILGVT..FKR..NS......VGAY.DD | |
Retrocopy | MAFLHASHVLSEVATTFH*GLAAVTSARASSWWTRVGMGPPDPILGVT*TFKRGVNSXXXXV-VGAY*DD |
Parental | NGKPYVLPSVRKAEAQIAAKNLDKEYLPIAGLAEFCKASAELALGENNEVLKSSRYVTVQTISGTGALRI |
NGKPYV..SV.KA.AQI.AK..DKEYL.IAG...FCKASAELAL.ENNEVLKSS.YVT.QTISG..AL.I | |
Retrocopy | NGKPYVPYSVQKAKAQITAKKFDKEYLSIAGFGKFCKASAELALSENNEVLKSSWYVTIQTISGNAALMI |
Parental | GASFLQRFFKFSRDVYLP-KPSWGNHTPVFRDAGMQLHSYRYYDPKTCGFDFTGAIEDISKMPQQSVLLL |
GASF..RFFK.S.DV.LP..PSW.N.TP.FRDAG.QLH.Y.Y..PKTC..DF.G.IEDI.KMPQQSV.LL | |
Retrocopy | GASFFKRFFKLSQDVFLP<QPSWRNYTPIFRDAGVQLHDYQY*GPKTCSSDFIGTIEDILKMPQQSV-LL |
Parental | HACAHNPTGVDPRPEQWKEIATVVKKNNLFAFFDMAYQGFASGDG-NKDAWAVRH--FIEQGINVCLCQS |
HAC.H.P.GVDP.P..WKE.ATV.KKNN.F..F.M.YQGFASGDG..KDAWAV.H..FI.QGI.VCLCQS | |
Retrocopy | HACVHSP-GVDPYPDKWKEAATVMKKNNFFVSFYMSYQGFASGDG<QKDAWAVYHFIFIKQGITVCLCQS |
Parental | YAKNMGLYGERVGAFTVVCKDA |
Y.KN.GLY.E.VGAF.VVC.DA | |
Retrocopy | YTKNIGLYSEHVGAFIVVCQDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 116 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 87 .70 RPM |
SRP017611_liver | 0 .00 RPM | 122 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017346 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000008357 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011234 | 1 retrocopy | |
Equus caballus | ENSECAG00000016504 | 1 retrocopy | |
Felis catus | ENSFCAG00000025552 | 3 retrocopies |
retro_fcat_1068, retro_fcat_1888 , retro_fcat_381,
|
Gorilla gorilla | ENSGGOG00000005767 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000006000 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004862 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007413 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000011782 | 1 retrocopy |