RetrogeneDB ID: | retro_amel_1805 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL194478.1:138427..139540(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000017346 | ||
Aliases: | None | ||
Description: | Aspartate aminotransferase [Source:UniProtKB/TrEMBL;Acc:G1MG53] |
Percent Identity: | 80.11 % |
Parental protein coverage: | 86.05 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 0 |
Parental | NLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIAGLAEFCKASAELALGENNEVLKSSRYATVQ |
NLG..A..DDNGK.YVLPSV..A.AQIAAK.LDKEYLPI.GLAEFCKASAELALGENNEVLKSS.Y.TVQ | |
Retrocopy | NLGFCAHQDDNGKAYVLPSVQNAKAQIAAKSLDKEYLPIVGLAEFCKASAELALGENNEVLKSSQYVTVQ |
Parental | TISGTGALRIGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHGYRYYDPKTCGFDFTGAIEDISK |
TISGT..LRIG...L.RFFKF.RDVFLPKPS.GN.T.IFRD.G..LHGYRY.DPKTC..DF.G.IEDISK | |
Retrocopy | TISGTRTLRIGDRLL*RFFKFGRDVFLPKPS*GNRTHIFRDVGI*LHGYRY*DPKTCSCDFIGTIEDISK |
Parental | MPQQSVLLLHACAHNPTGVDPRPEQWKEMATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFI--EQG |
M.QQ.VLL.H.CAHNPTG....PEQWKE.ATVVKKNNLFAFF.MAYQGF.SGDGNKDAWA..HFI..EQG | |
Retrocopy | MLQQNVLL-HVCAHNPTGMCFCPEQWKEVATVVKKNNLFAFFGMAYQGFVSGDGNKDAWAMCHFIFTEQG |
Parental | INVCLCQSYAKNMGLYGERVGAFTVVCKDADEAKRVESQLKILIRPMYSNPPVNGARIASTILTSPDLRK |
IN.CL.QS.AKNMGLY.E.VG.FTVVCKD.DEAKRVESQLKILI.PMYSNPP..GA.IA.TILTSPDL.. | |
Retrocopy | INICLYQSDAKNMGLYSEHVGSFTVVCKDTDEAKRVESQLKILICPMYSNPPISGACIALTILTSPDL** |
Parental | QWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRI |
QWLQEVKGMA..IISM..QLVSNL.KEG..H..QHITDQIGMFCFTGLKPEQVERLTKEFSI.MTKDG.I | |
Retrocopy | QWLQEVKGMAHPIISMWIQLVSNLQKEGFPHY*QHITDQIGMFCFTGLKPEQVERLTKEFSIHMTKDGHI |
Parental | SVAGVTSGNVGYLAHAIHQVTK |
SVAGVT..NVGYL.HAIHQV.K | |
Retrocopy | SVAGVTLDNVGYLTHAIHQVSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017346 | 3 retrocopies |
retro_amel_1805 , retro_amel_815, retro_amel_846,
|
Canis familiaris | ENSCAFG00000008357 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011234 | 1 retrocopy | |
Equus caballus | ENSECAG00000016504 | 1 retrocopy | |
Felis catus | ENSFCAG00000025552 | 3 retrocopies | |
Homo sapiens | ENSG00000125166 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000005767 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000012574 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000008954 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006000 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004862 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031672 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003871 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000551 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007413 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000008185 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000011782 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001808 | 1 retrocopy |