Parental gene: | GOT2, ENSPPYG00000007413 |
| Aliases: | None |
| Description: | Aspartate aminotransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5REB0] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 16:45877818..45918983(-) |
>ENSPPYG00000007413
ATGGCCCTGCTGCACTCTGGCCGCGCCCTCCCCGGGATCGCCGCCGCCTTCCACCCGGGACTCGCCGCCGCGGCCTCTGC
CAGAGCCAGCTCCTGGTGGACCCATGTGGAAATGGGACCTCCAGATCCCATTCTGGGAGTCACTGAAGCCTTTAAGAGGG
ACACCAATAGCAAAAAGATGAATCTGGGAGTTGGTGCCTACCGGGATGATAACGGAAAGCCTTACGTGCTGCCTAGCGTC
CGCAAGGCAGAGGCCCAGATTGCCGCAAAAAATTTGGACAAGGAATACCTGCCCATTGGGGGACTGGCTGAATTTTGCAA
GGCATCTGCAGAACTAGCCCTGGGTGAGAACAGCGAAGTCTTGAAGAGTGGCCGGTTTGTCACTGTGCAGACCATTTCTG
GAACTGGAGCCTTAAGGATCGGAGCCAGTTTTCTGCAAAGATTTTTTAAGTTCAGCCGAGATGTCTTTCTGCCCAAACCA
TCCTGGGGAAACCACACACCCATCTTCAGGGATGCTGGCATGCAGCTACAAGGTTATCGGTATTATGACCCCAAGACTTG
CGGTTTTGACTTCACAGGTGCTGTGGAGGATATTTCAAAAATACCAGAGCAGAGTGTTCTTCTTCTGCATGCCTGCGCCC
ACAATCCCACGGGAGTGGACCCGCGTCCGGAACAGTGGAAGGAAATAGCAACAGTGGTGAAGAAAAGGAATCTCTTTGCG
TTCTTTGACATGGCCTACCAAGGCTTTGCCAGTGGTGATGGTGATAAGGATGCCTGGGCTGTGCGCCACTTCATCGAACA
GGGCATTAATGTTTGTCTCTGCCAATCATATGCCAAGAACATGGGCTTATATGGTGAGCGTGTAGGAGCCTTCACTATGG
TCTGCAAAGATGCGGATGAAGCCAAAAGGGTAGAGTCACAGTTGAAGATCTTGATCCGTCCCATGTATTCCAACCCTCCC
CTCAATGGGGCCCGGATTGCTGCTGCCATTCTGAACACCCCAGATTTGCGAAAACAATGGCTGCAAGAAGTGAAAGGCAT
GGCCGACCGCATCATTGGCATGCGGACTCAACTGGTCTCCAACCTCAAGAAGGAGGGTTCCACCCACAACTGGCAACACA
TCACCGACCAAATTGGCATGTTCTGTTTCACAGGGCTAAAGCCTGAACAGGTGGAGCGGCTGATCAAGGAGTTCTCCATC
TACATGACAAAGGATGGCCGCATCTCTGTGGCAGGGGTCACCTCCAGCAACGTGGGCTACCTTGCCCATGCCATTCACCA
GGTCACCAAGTAA
ATGGCCCTGCTGCACTCTGGCCGCGCCCTCCCCGGGATCGCCGCCGCCTTCCACCCGGGACTCGCCGCCGCGGCCTCTGC
CAGAGCCAGCTCCTGGTGGACCCATGTGGAAATGGGACCTCCAGATCCCATTCTGGGAGTCACTGAAGCCTTTAAGAGGG
ACACCAATAGCAAAAAGATGAATCTGGGAGTTGGTGCCTACCGGGATGATAACGGAAAGCCTTACGTGCTGCCTAGCGTC
CGCAAGGCAGAGGCCCAGATTGCCGCAAAAAATTTGGACAAGGAATACCTGCCCATTGGGGGACTGGCTGAATTTTGCAA
GGCATCTGCAGAACTAGCCCTGGGTGAGAACAGCGAAGTCTTGAAGAGTGGCCGGTTTGTCACTGTGCAGACCATTTCTG
GAACTGGAGCCTTAAGGATCGGAGCCAGTTTTCTGCAAAGATTTTTTAAGTTCAGCCGAGATGTCTTTCTGCCCAAACCA
TCCTGGGGAAACCACACACCCATCTTCAGGGATGCTGGCATGCAGCTACAAGGTTATCGGTATTATGACCCCAAGACTTG
CGGTTTTGACTTCACAGGTGCTGTGGAGGATATTTCAAAAATACCAGAGCAGAGTGTTCTTCTTCTGCATGCCTGCGCCC
ACAATCCCACGGGAGTGGACCCGCGTCCGGAACAGTGGAAGGAAATAGCAACAGTGGTGAAGAAAAGGAATCTCTTTGCG
TTCTTTGACATGGCCTACCAAGGCTTTGCCAGTGGTGATGGTGATAAGGATGCCTGGGCTGTGCGCCACTTCATCGAACA
GGGCATTAATGTTTGTCTCTGCCAATCATATGCCAAGAACATGGGCTTATATGGTGAGCGTGTAGGAGCCTTCACTATGG
TCTGCAAAGATGCGGATGAAGCCAAAAGGGTAGAGTCACAGTTGAAGATCTTGATCCGTCCCATGTATTCCAACCCTCCC
CTCAATGGGGCCCGGATTGCTGCTGCCATTCTGAACACCCCAGATTTGCGAAAACAATGGCTGCAAGAAGTGAAAGGCAT
GGCCGACCGCATCATTGGCATGCGGACTCAACTGGTCTCCAACCTCAAGAAGGAGGGTTCCACCCACAACTGGCAACACA
TCACCGACCAAATTGGCATGTTCTGTTTCACAGGGCTAAAGCCTGAACAGGTGGAGCGGCTGATCAAGGAGTTCTCCATC
TACATGACAAAGGATGGCCGCATCTCTGTGGCAGGGGTCACCTCCAGCAACGTGGGCTACCTTGCCCATGCCATTCACCA
GGTCACCAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 95 .43 RPM |
| SRP007412_cerebellum | 91 .93 RPM |
| SRP007412_heart | 165 .27 RPM |
| SRP007412_kidney | 70 .04 RPM |
| SRP007412_liver | 158 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017346 | possible_ortholog | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000008357 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011234 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000016504 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000025552 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000125166 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005767 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000012574 | possible_ortholog | 1 retrogene | |
| Microcebus murinus | ENSMICG00000008954 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000006000 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000004862 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000031672 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000003871 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000000551 | possible_ortholog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000008185 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000011782 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001808 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_823 | 84.26 | 54.42 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_901 | 86.93 | 70.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3640 | 75.00 | 55.12 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000007413 retrocopies