Parental gene: | ENSCAFG00000008357 |
| Aliases: | None |
| Description: | None |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 2:57968954..57993107(+) |
>ENSCAFG00000008357
ATGGCCCTGTTGCACTCCGGCCGCGTCCTGTCTGGGGTCGCCGCCGCCTTCCACCCAGGCCTCGCTGGTGCGGCTTCTGC
GAGAGCCAGTTCCTGGTGGACCCATGTGGAAATGGGGCCTCCAGACCCCATCCTGGGAGTCACAGAAGCCTTTAAGAGAG
ACACTAACAGCAAAAAGATGAATCTGGGAGTTGGCGCCTATCGGGATGATAATGGAAAGCCTTATGTGCTCCCTAGTGTC
CGGAAGGCAGAGGCCCAGATTGCTGCAAAAAATTTGGACAAAGAATACCTGCCCATTGCTGGACTTGCTGAATTTTGTAA
GGCATCTGCAGAACTAGCCCTGGGTGAGAACAATGAAGTGTTGAAAAGTAGCCGGTATGTCACCGTGCAGACCATTTCTG
GAACAGGGGCATTGAGGATTGGAGCCAGTTTTCTGCAAAGATTTTTTAAGTTCAGCCAAGATGTCTTTCTGCCCAAACCA
TCCTGGGGAAACCATACACCAATCTTCAGGGACGCTGGCATGCAGCTACATGGTTATCGATACTATGACCCCAAGACGTG
CGGCTTTGATTTCACAGGCGCTATAGAGGACATTTCGAAAATGCCACAGCAAAGTGTTCTTCTCCTGCATGCCTGTGCCC
ACAATCCCACGGGAGTAGACCCCCGCCCTGAGCAGTGGAAGGAAATAGCAACAGTGGTGAAGAAAAATAATCTCTTTGCA
TTCTTTGACATGGCCTACCAAGGCTTTGCCAGTGGTGATGGTAACAAGGATGCCTGGGCTGTACGCCACTTCATCGAACA
AGGCATTAATGTTTGTCTCTGCCAATCCTATGCCAAGAACATGGGCTTATACGGTGAGCGTGTAGGAGCCTTCACTGTGG
TCTGCAAGGATGCTGATGAAGCTAAAAGGGTGGAGTCACAGTTGAAGATCTTGATCCGTCCCATGTATTCCAACCCTCCA
ATCAATGGGGCCCGAATTGCCTCAACCATCCTGACCAGCCCTGACCTGCGAAAACAATGGTTGCAGGAAGTAAAAGGCAT
GGCCGACCGCATCATTAGCATGCGTACTCAGCTGGTCTCCAACCTCAAGAAGGAGGGCTCCTCCCACAATTGGCAGCACA
TCACTGACCAGATTGGCATGTTTTGTTTCACAGGACTAAAGCCTGAACAGGTGGAGAGGCTGACCAAGGAGTTCTCCATC
TACATGACAAAGGATGGCCGCATCTCTGTGGCAGGGGTCACCTCTGGCAATGTGGGCTACCTTGCCCATGCCATTCACCA
GGTTACCAAGTAA
ATGGCCCTGTTGCACTCCGGCCGCGTCCTGTCTGGGGTCGCCGCCGCCTTCCACCCAGGCCTCGCTGGTGCGGCTTCTGC
GAGAGCCAGTTCCTGGTGGACCCATGTGGAAATGGGGCCTCCAGACCCCATCCTGGGAGTCACAGAAGCCTTTAAGAGAG
ACACTAACAGCAAAAAGATGAATCTGGGAGTTGGCGCCTATCGGGATGATAATGGAAAGCCTTATGTGCTCCCTAGTGTC
CGGAAGGCAGAGGCCCAGATTGCTGCAAAAAATTTGGACAAAGAATACCTGCCCATTGCTGGACTTGCTGAATTTTGTAA
GGCATCTGCAGAACTAGCCCTGGGTGAGAACAATGAAGTGTTGAAAAGTAGCCGGTATGTCACCGTGCAGACCATTTCTG
GAACAGGGGCATTGAGGATTGGAGCCAGTTTTCTGCAAAGATTTTTTAAGTTCAGCCAAGATGTCTTTCTGCCCAAACCA
TCCTGGGGAAACCATACACCAATCTTCAGGGACGCTGGCATGCAGCTACATGGTTATCGATACTATGACCCCAAGACGTG
CGGCTTTGATTTCACAGGCGCTATAGAGGACATTTCGAAAATGCCACAGCAAAGTGTTCTTCTCCTGCATGCCTGTGCCC
ACAATCCCACGGGAGTAGACCCCCGCCCTGAGCAGTGGAAGGAAATAGCAACAGTGGTGAAGAAAAATAATCTCTTTGCA
TTCTTTGACATGGCCTACCAAGGCTTTGCCAGTGGTGATGGTAACAAGGATGCCTGGGCTGTACGCCACTTCATCGAACA
AGGCATTAATGTTTGTCTCTGCCAATCCTATGCCAAGAACATGGGCTTATACGGTGAGCGTGTAGGAGCCTTCACTGTGG
TCTGCAAGGATGCTGATGAAGCTAAAAGGGTGGAGTCACAGTTGAAGATCTTGATCCGTCCCATGTATTCCAACCCTCCA
ATCAATGGGGCCCGAATTGCCTCAACCATCCTGACCAGCCCTGACCTGCGAAAACAATGGTTGCAGGAAGTAAAAGGCAT
GGCCGACCGCATCATTAGCATGCGTACTCAGCTGGTCTCCAACCTCAAGAAGGAGGGCTCCTCCCACAATTGGCAGCACA
TCACTGACCAGATTGGCATGTTTTGTTTCACAGGACTAAAGCCTGAACAGGTGGAGAGGCTGACCAAGGAGTTCTCCATC
TACATGACAAAGGATGGCCGCATCTCTGTGGCAGGGGTCACCTCTGGCAATGTGGGCTACCTTGCCCATGCCATTCACCA
GGTTACCAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 45 .81 RPM |
| SRP017611_kidney | 69 .87 RPM |
| SRP017611_liver | 54 .68 RPM |
| SRP012049_cerebellum | 42 .25 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017346 | ortholog_one2many | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011234 | possible_ortholog | 1 retrogene | |
| Equus caballus | ENSECAG00000016504 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000025552 | ortholog_one2many | 3 retrogenes | |
| Homo sapiens | ENSG00000125166 | possible_ortholog | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005767 | possible_ortholog | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000012574 | possible_ortholog | 1 retrogene | |
| Microcebus murinus | ENSMICG00000008954 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000006000 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000004862 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000031672 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000003871 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000000551 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000007413 | possible_ortholog | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000008185 | possible_ortholog | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000011782 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001808 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_586 | 99.77 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_816 | 70.75 | 72.33 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000008357 retrocopies