RetrogeneDB ID: | retro_fcat_1371 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:130914598..130914928(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000022580 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.68 % |
Parental protein coverage: | 70.44 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MANLWRLGVLCRAQGGRALFLRIPVVRP-AYVSAFLQDQPAPGQCRTQHIHLSPNHHAGSKASSLHWTGE |
M..LWRL.VL..A.GG.AL.LRIPVVR..A.VSAFLQD.PAPG.CRTQ.I...PN...GSKA.SL.WTGE | |
Retrocopy | MGSLWRLRVLGSARGG*ALLLRIPVVRL>ARVSAFLQD*PAPGWCRTQRIQ--PNRRWGSKAASLPWTGE |
Parental | RVVSVLLLGLIPAAYLNPSSAMDY-SLAAALTLHSHWGLGQVVT |
RV.SVLLLGLIPAAYLNP.S.M.Y..L.AAL.LHSHWGLGQVVT | |
Retrocopy | RVGSVLLLGLIPAAYLNPGSVMNY<PLTAALSLHSHWGLGQVVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 67 .26 RPM |
SRP017611_kidney | 0 .00 RPM | 228 .07 RPM |
SRP017611_liver | 0 .00 RPM | 125 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004066 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000013091 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008424 | 1 retrocopy | |
Felis catus | ENSFCAG00000022580 | 3 retrocopies |
retro_fcat_1371 , retro_fcat_175, retro_fcat_492,
|
Homo sapiens | ENSG00000204370 | 8 retrocopies | |
Gorilla gorilla | ENSGGOG00000026496 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002763 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012228 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000015247 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000022980 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000015034 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010520 | 5 retrocopies |