RetrogeneDB ID: | retro_fcat_175 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:125009342..125009801(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000022580 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.55 % |
Parental protein coverage: | 94.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VLCRAQGGRALFLRIPVVRPA--YVSAFLQDQPAPGQCRTQHIHLSPNHHAGSKASSLHWTGERVVSVLL |
VLC.AQ.GRALFL..PVVR.A.....AFLQ..PA.G...TQHIHLSPNHH.GS.ASSL..TGERV.SVLL | |
Retrocopy | VLCSAQRGRALFLQMPVVRHARAHMLAFLQVRPASGWWKTQHIHLSPNHHCGS*ASSLSLTGERVGSVLL |
Parental | LGLIPAAYLNPSSAMDYSLAAALTLHSHWGLGQVVTDYVHGDALQKTAKAGVLALSALTFAGLCYFNYHD |
LGL.PAA.L...S..DYSLAAALT.HS.WGLGQVVTDYV.GDA.QK.AKAGVLA..ALTFAGLCYF.... | |
Retrocopy | LGLVPAAGLDHGSVTDYSLAAALTFHSYWGLGQVVTDYVRGDAWQKAAKAGVLAFLALTFAGLCYFSFYP |
Parental | VGICKAVAMLWKL |
.GICK.VAM.WKL | |
Retrocopy | MGICKSVAMMWKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 67 .26 RPM |
SRP017611_kidney | 0 .00 RPM | 228 .07 RPM |
SRP017611_liver | 0 .00 RPM | 125 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004066 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000013091 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008424 | 1 retrocopy | |
Felis catus | ENSFCAG00000022580 | 3 retrocopies |
retro_fcat_1371, retro_fcat_175 , retro_fcat_492,
|
Homo sapiens | ENSG00000204370 | 8 retrocopies | |
Gorilla gorilla | ENSGGOG00000026496 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002763 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012228 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000015247 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000022980 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000015034 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010520 | 5 retrocopies |