RetrogeneDB ID: | retro_rnor_1529 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:124316801..124317278(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Sdhd | ||
Ensembl ID: | ENSRNOG00000022980 | ||
Aliases: | None | ||
Description: | Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6PCT8] |
Percent Identity: | 77.99 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAVLLKLGVLCSGQGARALSLRSRAVRPAFVSAFLQDQPTPGWRGTQHIHLSPSHQSGSKAASLHWTSER |
MAVLLKLG.LC.GQGARAL.L.S..VR.A.V.AFL.DQPTPG.RGTQHIHLSPSH.SG.KA.SLHWTS.. | |
Retrocopy | MAVLLKLGILCGGQGARALLL*SWMVRTAHVPAFL*DQPTPGLRGTQHIHLSPSHHSGFKATSLHWTSKS |
Parental | VVSVLLLGLIPAGYLNPCSVVDYSLAAALTLHSHWGIGQVVTDYVHGDALQKATKAGLLAVSALTFAGLC |
VV.VL.LGL...GYLNPCS.V.YSLAAALTLH.HWG.GQVV.DY.HGD.LQKA.K.G.LA.SALTFAGLC | |
Retrocopy | VVGVLSLGLLSVGYLNPCSLVHYSLAAALTLHTHWGLGQVVIDYIHGDTLQKAVKRGHLAHSALTFAGLC |
Parental | YFNYHDVGICRAVAMLWKL |
YFNYH.VGICR.V.MLWKL | |
Retrocopy | YFNYHNVGICREVVMLWKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 229 .23 RPM |
SRP017611_liver | 0 .00 RPM | 80 .75 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004066 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000013091 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008424 | 1 retrocopy | |
Felis catus | ENSFCAG00000022580 | 3 retrocopies | |
Homo sapiens | ENSG00000204370 | 8 retrocopies | |
Gorilla gorilla | ENSGGOG00000026496 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002763 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012228 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000015247 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000022980 | 3 retrocopies |
retro_rnor_1529 , retro_rnor_1686, retro_rnor_744,
|
Sus scrofa | ENSSSCG00000015034 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010520 | 5 retrocopies |