RetrogeneDB ID:

retro_ttru_1554

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_116180:367342..367819(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000010520
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1554
ATGGCGACTCTCTGGAGGCTGAGTGTCCTCTGCGGTGCCGGAGGTGGGCGAGCTCTCTTCCTCCGAACCCCAGTGGTCAG
ACCGGCTCATGTCTCAGCATTTCTCCAGGACCGATCAACTCCAGGATGGTGTGGAATACAGCACATTCACCTGTCACCCA
GCCACCATTCTGGTTCCAAGGCTGCGTCTCTCCACTGGACTGGTGAGAGGGTTGTCAGCGTTTTGCTCCTGGGCCTAATT
CCAGCTGCTTATTTGAATCCTTGCTCTGCGGTGGACTACCCTCTGGCTGCAGCCCTCACTCTTCATAGTCACTGGGGCAT
TGGACAAGTTGTTACTGACTATGTTCGAGGGGCTGCGTTGCAGAAAGCTGCCAAGGCAGGCTTTTTGGTGCTCTCGGCGT
TCACATTTGCTGGGCTTTGTTATTTCAACTATCATGATGTGGGCATCTGCAAAGCTGTGGCTATGCTGTGGAAGCTC

ORF - retro_ttru_1554 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.37 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMATLWRLSVLCGAGGGRALFLRTPVVRPAHVSAFLQDRSTPGWCGIQHIHLSPSHHSGSKAASLHWTGER
MATLWRLSVLCGAGGGRALFLRTPVVRPAHVSAFLQDRSTPGWCGIQHIHLSPSHHSGSKAASLHWTGER
RetrocopyMATLWRLSVLCGAGGGRALFLRTPVVRPAHVSAFLQDRSTPGWCGIQHIHLSPSHHSGSKAASLHWTGER
ParentalVVSVLLLGLIPAAYLNPCSAVDYSLAAALTLHSHWGIGQVVTDYVRGAALQKAAKAGFLVLSAFTFAGLC
VVSVLLLGLIPAAYLNPCSAVDY.LAAALTLHSHWGIGQVVTDYVRGAALQKAAKAGFLVLSAFTFAGLC
RetrocopyVVSVLLLGLIPAAYLNPCSAVDYPLAAALTLHSHWGIGQVVTDYVRGAALQKAAKAGFLVLSAFTFAGLC
ParentalYFNYHDVGICKAVAMLWKL
YFNYHDVGICKAVAMLWKL
RetrocopyYFNYHDVGICKAVAMLWKL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1554 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1554 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 33 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000040663 retrocopies
Erinaceus europaeus ENSEEUG000000130911 retrocopy
Echinops telfairi ENSETEG000000084241 retrocopy
Felis catus ENSFCAG000000225803 retrocopies
Homo sapiens ENSG000002043708 retrocopies
Gorilla gorilla ENSGGOG000000264961 retrocopy
Loxodonta africana ENSLAFG000000027631 retrocopy
Myotis lucifugus ENSMLUG000000122283 retrocopies
Macaca mulatta ENSMMUG000000152471 retrocopy
Rattus norvegicus ENSRNOG000000229803 retrocopies
Sus scrofa ENSSSCG000000150343 retrocopies
Tursiops truncatus ENSTTRG00000010520 5 retrocopies



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