RetrogeneDB ID: | retro_fcat_1450 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:66624446..66624825(-) | ||
Located in intron of: | ENSFCAG00000019083 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAP18 | ||
Ensembl ID: | ENSFCAG00000007026 | ||
Aliases: | None | ||
Description: | Sin3A-associated protein, 18kDa [Source:HGNC Symbol;Acc:10530] |
Percent Identity: | 81.25 % |
Parental protein coverage: | 73.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDP |
P..L.VFTTNNG.HH..DEF.R.NVPSSEL.IYT.MDATLKELT.LV.EV.PEARK.GTHF.FAIVFTDP | |
Retrocopy | PPPLCVFTTNNGGHHQRDEFPRRNVPSSELHIYTCMDATLKELTNLV-EVHPEARKEGTHFSFAIVFTDP |
Parental | KR-PGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY |
K..PGY..K..GSTMSGRKGTDDSMTLQSQKFQIGDYLDIA.TPPNRAP.PSGR.RPY | |
Retrocopy | KI>PGYQGKQTGSTMSGRKGTDDSMTLQSQKFQIGDYLDIATTPPNRAPLPSGRTRPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .69 RPM |
SRP017611_kidney | 0 .00 RPM | 32 .98 RPM |
SRP017611_liver | 0 .00 RPM | 15 .67 RPM |