Parental gene:

SAP18, ENSETEG00000005565

Aliases:None
Description:Sin3A-associated protein, 18kDa [Source:HGNC Symbol;Acc:10530]
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_4997:222..3928(+)


>ENSETEG00000005565
ATGGCGGTGGAGTCGCGCGTCACCCAAGAGGAAATTAAGAAGGAGCCGGAGAAGCCGATCGACCGGGAGAAGAAGTGCCC
GCTGCTGCTGCGGGTCCTCACCACCAACAACGGGCGCCACCACCGAATGGACGAGTTCTCCCGCGGAAACGTGCCGTCCA
GCGAGCTGCAGATCTACACTTGGATGGATGCAACCTTGAAGGAACTGACAAGTTTAGTAAAAGAGGTTTACCCAGAAGCT
AGAAAGAAGGGCACGCACTTCAATTTTGCGATTGTTTTCACAGACCTGAAAAGACCGGGCTATCGAGTCAAGGAAATTGG
CAGCACCATGTCAGGCAGGAAGGGGACCGACGATTCCATGACCCTGCAATCACAGAAGTTCCAAATAGGGGATTATCTGG
ACATCGCAATCACCCCTCCCAACCGGGCACCCCCTCCCTCTGGGCGCATGAGGCCATATTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018631 ortholog_one2one 1 retrogene
retro_btau_1443,
Canis familiaris ENSCAFG00000032070 ortholog_one2one 3 retrogenes
retro_cfam_561, retro_cfam_733, retro_cfam_979,
Callithrix jacchus ENSCJAG00000018645 ortholog_one2one 3 retrogenes
retro_cjac_1601, retro_cjac_2804, retro_cjac_2935,
Cavia porcellus ENSCPOG00000008598 ortholog_one2one 1 retrogene
retro_cpor_897,
Dasypus novemcinctus ENSDNOG00000015204 ortholog_one2one 3 retrogenes
retro_dnov_1027, retro_dnov_119, retro_dnov_1600,
Equus caballus ENSECAG00000013508 ortholog_one2one 1 retrogene
retro_ecab_321,
Erinaceus europaeus ENSEEUG00000006309 ortholog_one2many 1 retrogene
retro_eeur_674,
Felis catus ENSFCAG00000007026 ortholog_one2one 1 retrogene
retro_fcat_1450,
Homo sapiens ENSG00000150459 ortholog_one2one 2 retrogenes
retro_hsap_2186, retro_hsap_2759,
Loxodonta africana ENSLAFG00000030963 ortholog_one2one 2 retrogenes
retro_lafr_338, retro_lafr_358,
Microcebus murinus ENSMICG00000004309 ortholog_one2one 2 retrogenes
retro_mmur_1092, retro_mmur_1312,
Myotis lucifugus ENSMLUG00000002852 ortholog_one2one 4 retrogenes
retro_mluc_1903, retro_mluc_2197, retro_mluc_2239, retro_mluc_407,
Macaca mulatta ENSMMUG00000010416 ortholog_one2one 2 retrogenes
retro_mmul_465, retro_mmul_914,
Mustela putorius furo ENSMPUG00000000607 possible_ortholog 1 retrogene
retro_mputfur_35,
Mus musculus ENSMUSG00000021963 ortholog_one2many 1 retrogene
retro_mmus_82,
Nomascus leucogenys ENSNLEG00000001995 ortholog_one2one 2 retrogenes
retro_nleu_2922, retro_nleu_315,
Oryctolagus cuniculus ENSOCUG00000012716 ortholog_one2one 1 retrogene
retro_ocun_915,
Otolemur garnettii ENSOGAG00000010062 ortholog_one2one 2 retrogenes
retro_ogar_2213, retro_ogar_650,
Pongo abelii ENSPPYG00000005198 ortholog_one2one 2 retrogenes
retro_pabe_2066, retro_pabe_2253,
Pan troglodytes ENSPTRG00000005692 ortholog_one2one 2 retrogenes
retro_ptro_1664, retro_ptro_1866,
Rattus norvegicus ENSRNOG00000010732 ortholog_one2many 1 retrogene
retro_rnor_163,
Sorex araneus ENSSARG00000004923 ortholog_one2one 3 retrogenes
retro_sara_232, retro_sara_471, retro_sara_743,
Ictidomys tridecemlineatus ENSSTOG00000005735 ortholog_one2one 3 retrogenes
retro_itri_1114, retro_itri_1382, retro_itri_1627,
Tursiops truncatus ENSTTRG00000016912 ortholog_one2one 3 retrogenes
retro_ttru_115, retro_ttru_1453, retro_ttru_381,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_etel_98 64.29 86.27
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2. retro_etel_262 62.04 68.63
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3. retro_etel_456 67.69 83.66
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4. retro_etel_708 81.41 100.00
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5. retro_etel_879 67.97 82.35
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6. retro_etel_891 71.76 84.97
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7. retro_etel_1176 92.65 88.89
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8. retro_etel_1379 84.62 100.00
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9. retro_etel_1411 79.65 73.86
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10. retro_etel_1716 79.61 97.39
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11. retro_etel_1811 68.52 68.63
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Download FASTA sequences of all ENSETEG00000005565 retrocopies