RetrogeneDB ID: | retro_ocun_915 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:52108533..52108946(+) | ||
Located in intron of: | ENSOCUG00000014205 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000025739 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAP18 | ||
Ensembl ID: | ENSOCUG00000012716 | ||
Aliases: | None | ||
Description: | Sin3A-associated protein, 18kDa [Source:HGNC Symbol;Acc:10530] |
Percent Identity: | 67.83 % |
Parental protein coverage: | 92.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELT |
M.VES.VT.EE..KEP.KP.D..K.CPLLLRVF.T.N..HH...EFS.GNV.SSELQ.......TL.ELT | |
Retrocopy | MVVESWVTLEEMTKEPGKPADCKKMCPLLLRVFITHNCCHHWVHEFSHGNVLSSELQV----ELTLIELT |
Parental | SLVKEVYPEARKKGTHFNFAIVFTDIKRPGYRVKEIG-STMSGRKGTDDSMTLQSQKFQIGDYLDIAITP |
SLVKE..PE.RKKGTHF.FA.V.T.IK.PG.RVKEI..S..SGRKGTDDSMT.QSQKFQIGDYLD...T. | |
Retrocopy | SLVKEIHPETRKKGTHFYFAVVSTNIKKPGHRVKEIA<SIVSGRKGTDDSMTQQSQKFQIGDYLDKLGTT |
Parental | PNR |
P.R | |
Retrocopy | PFR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 63 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 64 .06 RPM |
SRP017611_liver | 0 .00 RPM | 20 .04 RPM |