RetrogeneDB ID: | retro_fcat_1815 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:44465283..44465628(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEC11C | ||
Ensembl ID: | ENSFCAG00000006501 | ||
Aliases: | None | ||
Description: | SEC11 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:23400] |
Percent Identity: | 63.25 % |
Parental protein coverage: | 59.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LLFLTNFRE-DPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDRGLY-KEGQNWL |
LL.LTNFR...P...GEIV.FK.E..D.PIVHRVIKV.EKDN.DI.FLTKGDNNEVDDRG.Y.......L | |
Retrocopy | LLLLTNFRA<NPSGIGEIVIFKIE*FDTPIVHRVIKVQEKDNEDIRFLTKGDNNEVDDRGAYTNKATTSL |
Parental | EKKDVVGRA-RGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE |
..K...GR...GFLPYV.M.T.IMNDYP.F.Y..L..M..YVLLK.E | |
Retrocopy | KRKMGWGRS>TGFLPYVSMATVIMNDYPNFRYVPLVLMSTYVLLKHE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 18 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .23 RPM |
SRP017611_liver | 0 .00 RPM | 14 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000017024 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000005115 | 2 retrocopies | |
Felis catus | ENSFCAG00000006501 | 1 retrocopy |
retro_fcat_1815 ,
|
Felis catus | ENSFCAG00000029786 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000016052 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020427 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009204 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000002570 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002950 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000004912 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014804 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007676 | 5 retrocopies |