Parental gene:

SEC11C, ENSSSCG00000004912

Aliases:None
Description:SEC11 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:23400]
Organism:Pig (Sus scrofa)
Coordinates:1:179382896..179397677(+)


>ENSSSCG00000004912
ATGGTGCGCGCGGGCGCTGTGGGGTCGCATCTCCCCACGTCCGGTTTGGACATCTTTGGGGACCTGAGGAAGATGAACAA
GCGCCAGCTCTATTACCAGGTCTTAAACTTCGCCATGATCGTGTCTTCTGCGCTCATGATCTGGAAAGGCTTGATTGTCC
TCACTGGCAGCGAGAGCCCCATCGTCGTGGTGCTAAGTGGCAGCATGGAGCCAGCCTTTCACAGGGGCGACCTTCTGTTC
CTAACAAATTTCCGGGAAGACCCGATTAGAGCTGGTGAAATTGTTGTTTTTAAAGTTGAAGGACGAGACATTCCAATAGT
TCACAGAGTAATCAAAGTTCATGAAAAAGATAATGGAGACATCAAATTTCTGACTAAAGGAGATAATAACGAAGTTGACG
ATAGAGGCTTGTACAAAGAAGGGCAAAACTGGCTCGAAAAGAAGGACGTGGTGGGAAGAGCCAGAGGGTTTTTACCGTAT
GTTGGCATGGTCACCATAATAATGAATGATTACCCAAAATTCAAGTATGCTCTTCTGGCTGTAATGGGTGCCTATGTGTT
ACTAAAACGTGAATCCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 21 .24 RPM
SRP014902_testis 52 .34 RPM
SRP018288_heart 26 .40 RPM
SRP018288_kidney 59 .99 RPM
SRP018288_liver 81 .23 RPM
SRP018288_lung 37 .47 RPM
SRP018856_adipose 21 .30 RPM
SRP035408_brain 118 .31 RPM
SRP035408_liver 207 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000017024 ortholog_one2one 3 retrogenes
retro_ecab_1009, retro_ecab_455, retro_ecab_989,
Echinops telfairi ENSETEG00000005115 ortholog_one2one 2 retrogenes
retro_etel_1081, retro_etel_1139,
Felis catus ENSFCAG00000006501 ortholog_one2one 1 retrogene
retro_fcat_1815,
Microcebus murinus ENSMICG00000016052 ortholog_one2one 1 retrogene
retro_mmur_271,
Monodelphis domestica ENSMODG00000020427 possible_ortholog 2 retrogenes
retro_mdom_1517, retro_mdom_377,
Oryctolagus cuniculus ENSOCUG00000009204 ortholog_one2one 2 retrogenes
retro_ocun_738, retro_ocun_895,
Otolemur garnettii ENSOGAG00000002570 ortholog_one2one 1 retrogene
retro_ogar_400,
Pteropus vampyrus ENSPVAG00000002950 ortholog_one2one 2 retrogenes
retro_pvam_620, retro_pvam_869,
Tupaia belangeri ENSTBEG00000014804 ortholog_one2one 1 retrogene
retro_tbel_2357,
Tursiops truncatus ENSTTRG00000007676 ortholog_one2one 5 retrogenes
retro_ttru_1278, retro_ttru_1508, retro_ttru_1780, retro_ttru_1916, retro_ttru_490,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_775 81.63 51.04
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Download FASTA sequences of all ENSSSCG00000004912 retrocopies