Parental gene: | SEC11C, ENSECAG00000017024 |
| Aliases: | None |
| Description: | SEC11 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:23400] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 8:76201218..76212940(+) |
>ENSECAG00000017024
ATGGTGCGCGCGGGCGCCGTGGGGACGCATCTCCCCGCGTCCGGCTTGGACATCTTCGGGGACCTGAGGAAAATGAACAA
GCGCCAGCTCTACTACCAGGTTCTAAACTTTGCCATGATCGTGTCTTCGGCACTCATGATCTGGAAAGGCTTGATCGTCC
TCACTGGCAGCGAGAGCCCCATCGTGGTGGTGCTGAGTGGCAGTATGGAGCCGGCCTTTCACAGGGGCGACCTTCTGTTC
CTAACGAATTTCCGGGAAGACCCTATAAGAGCTGGAGAAATCGTCGTTTTTAAAGTCGAAGGACGAGACATTCCAATAGT
TCACAGAGTAATCAAAGTTCATGAAAAAGATAATGGAGACATCAAATTTCTGACTAAAGGAGATAATAATGAAGTCGATG
ATAGAGGCTTGTACAAAGAAGGCCAGAACTGGCTGGAAAAGAAGGACGTGGTGGGAAGAGCCAGAGGGTTTTTACCATAT
GTTGGTATGGTCACCATAATAATGAATGACTATCCAAAATTCAAGTATGCTCTTTTGGCTGTAATGGGTGCGTATGTGTT
ACTAAAACGTGAATCCTAA
ATGGTGCGCGCGGGCGCCGTGGGGACGCATCTCCCCGCGTCCGGCTTGGACATCTTCGGGGACCTGAGGAAAATGAACAA
GCGCCAGCTCTACTACCAGGTTCTAAACTTTGCCATGATCGTGTCTTCGGCACTCATGATCTGGAAAGGCTTGATCGTCC
TCACTGGCAGCGAGAGCCCCATCGTGGTGGTGCTGAGTGGCAGTATGGAGCCGGCCTTTCACAGGGGCGACCTTCTGTTC
CTAACGAATTTCCGGGAAGACCCTATAAGAGCTGGAGAAATCGTCGTTTTTAAAGTCGAAGGACGAGACATTCCAATAGT
TCACAGAGTAATCAAAGTTCATGAAAAAGATAATGGAGACATCAAATTTCTGACTAAAGGAGATAATAATGAAGTCGATG
ATAGAGGCTTGTACAAAGAAGGCCAGAACTGGCTGGAAAAGAAGGACGTGGTGGGAAGAGCCAGAGGGTTTTTACCATAT
GTTGGTATGGTCACCATAATAATGAATGACTATCCAAAATTCAAGTATGCTCTTTTGGCTGTAATGGGTGCGTATGTGTT
ACTAAAACGTGAATCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 12 .11 RPM |
| SRP021940_embryo | 14 .30 RPM |
| SRP021940_cerebellum | 24 .10 RPM |
| SRP021940_testis | 25 .71 RPM |
| SRP021940_placental_villous | 29 .20 RPM |
| SRP021940_articular_cartilage | 21 .84 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000005115 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000006501 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000016052 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000020427 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000009204 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000002570 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000002950 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000004912 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000014804 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000007676 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_455 | 77.07 | 80.73 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_989 | 78.74 | 66.15 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ecab_1009 | 73.28 | 59.38 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000017024 retrocopies