RetrogeneDB ID: | retro_fcat_256 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:126030268..126030576(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLP2 | ||
Ensembl ID: | ENSFCAG00000003820 | ||
Aliases: | None | ||
Description: | proteolipid protein 2 (colonic epithelium-enriched) [Source:HGNC Symbol;Acc:9087] |
Percent Identity: | 78.85 % |
Parental protein coverage: | 67.76 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | DSERLSAPGCWAACTNFSRTRKGILLLAEIIFCLVILICFSASTPGYSSLSVVEMILATIFFVIYMCDLH |
DS...SA...WA.CTNFS...KGILL.AEII..LVILICF.ASTPG.SSL.VVEMILA.IFFVIYMCDLH | |
Retrocopy | DSKPRSASSWWASCTNFS*M*KGILLFAEIIWYLVILICFRASTPGHSSLPVVEMILAAIFFVIYMCDLH |
Parental | TKIQII-NWPWSDFFRTLIAAILYLITSIVVLVE |
TKIQII..WP.SDFF.TLIAAILYLITSI.VLVE | |
Retrocopy | TKIQII<HWPRSDFF*TLIAAILYLITSIFVLVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .07 RPM |
SRP017611_liver | 0 .00 RPM | 4 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012288 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016093 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000015798 | 1 retrocopy | |
Felis catus | ENSFCAG00000003820 | 2 retrocopies |
retro_fcat_1547, retro_fcat_256 ,
|
Homo sapiens | ENSG00000102007 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004483 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023022 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013817 | 3 retrocopies | |
Mus musculus | ENSMUSG00000031146 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001317 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003865 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000021885 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016968 | 2 retrocopies |