RetrogeneDB ID: | retro_ttru_767 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_3339:400332..400784(-) | ||
Located in intron of: | ENSTTRG00000006247 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLP2 | ||
Ensembl ID: | ENSTTRG00000016968 | ||
Aliases: | None | ||
Description: | proteolipid protein 2 (colonic epithelium-enriched) [Source:HGNC Symbol;Acc:9087] |
Percent Identity: | 87.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MADSERLSAP-GCWAACTNFSRTRKGILLFAEIILCLVILICFGASTSGYSFLSVIEMIFAAIFFVVYMC |
M.DSERLSAP.GCWAAC.NFSR.R.GILLFAEIILCLVILICFGASTSGYS.LSV.EM.FAA.F.VVYMC | |
Retrocopy | MVDSERLSAP<GCWAACSNFSRPRQGILLFAEIILCLVILICFGASTSGYSSLSVTEMVFAALF-VVYMC |
Parental | DLHTKIQFINWPWSDFFRTLVAVILYLITSIVVLVERGNHSKIVAGVLGLIAACLFGYDAYITFPLRQQR |
DLHTKIQ.INWPWSDFF.TLVAVIL.LITSIVVL.ERGNHSKI.AGVLGLI...LFGYDAYITFPLRQQR | |
Retrocopy | DLHTKIQIINWPWSDFF*TLVAVILHLITSIVVLGERGNHSKIIAGVLGLIPTLLFGYDAYITFPLRQQR |
Parental | HTAAPTDPADGPV |
HTAAPTDPADGP. | |
Retrocopy | HTAAPTDPADGPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012288 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016093 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000015798 | 1 retrocopy | |
Felis catus | ENSFCAG00000003820 | 2 retrocopies | |
Homo sapiens | ENSG00000102007 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004483 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023022 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013817 | 3 retrocopies | |
Mus musculus | ENSMUSG00000031146 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001317 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003865 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000021885 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016968 | 2 retrocopies |
retro_ttru_1586, retro_ttru_767 ,
|