RetrogeneDB ID: | retro_ogar_473 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873522.1:4710738..4710998(+) | ||
Located in intron of: | ENSOGAG00000012721 | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000024854 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLP2 | ||
Ensembl ID: | ENSOGAG00000003865 | ||
Aliases: | None | ||
Description: | proteolipid protein 2 (colonic epithelium-enriched) [Source:HGNC Symbol;Acc:9087] |
Percent Identity: | 73.33 % |
Parental protein coverage: | 58.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | FVIYMCDLNTKIPLINWPWSDFFRTLIGAILYLITSIVVLIERGNPSKIVAGVLGLIATCLFGYDAYVT- |
FVI..CDL.TK.P.INWPW..FF...IGAILYLITSIVVL.ERGN.SK...GV..LIA.C.FGYDAYVT. | |
Retrocopy | FVI*VCDLHTKMPFINWPWTCFFHSVIGAILYLITSIVVLVERGNRSKTIPGV--LIAICPFGYDAYVT< |
Parental | FPLRQQKHTAAPTEPADGPV |
.PL.QQ.HTAAPT.PADGPV | |
Retrocopy | LPLQQQRHTAAPTDPADGPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012288 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016093 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000015798 | 1 retrocopy | |
Felis catus | ENSFCAG00000003820 | 2 retrocopies | |
Homo sapiens | ENSG00000102007 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004483 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023022 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013817 | 3 retrocopies | |
Mus musculus | ENSMUSG00000031146 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001317 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003865 | 3 retrocopies |
retro_ogar_2568, retro_ogar_2865, retro_ogar_473 ,
|
Pan troglodytes | ENSPTRG00000021885 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016968 | 2 retrocopies |