RetrogeneDB ID: | retro_fcat_700 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:44777473..44778292(+) | ||
Located in intron of: | ENSFCAG00000009726 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPZA1 | ||
Ensembl ID: | ENSFCAG00000013303 | ||
Aliases: | None | ||
Description: | capping protein (actin filament) muscle Z-line, alpha 1 [Source:HGNC Symbol;Acc:1488] |
Percent Identity: | 86.5 % |
Parental protein coverage: | 95.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYEDQVLITEHGDLG |
V.IAAKFITHAPPGEFN.VF.DVRLLLNNDNLLREGAAHAFAQYNM.QFT.VKIEGY.DQVL.TE.GDLG | |
Retrocopy | VHIAAKFITHAPPGEFNAVFKDVRLLLNNDNLLREGAAHAFAQYNMGQFTSVKIEGYGDQVLSTEPGDLG |
Parental | NSRFLDPRNKISFKFDHLRKEASDPQPEDVDGGLKSWRESCDSALRAYVKDHYSNGFCTDVYAKTIDGQQ |
NSRFLDP.NKISFK.DH.RKEASDPQPEDVDGGLKS.RESCDSALRAYVKD.YSNGF.T.VYAKTI..QQ | |
Retrocopy | NSRFLDPKNKISFKLDHGRKEASDPQPEDVDGGLKSGRESCDSALRAYVKDRYSNGFHT-VYAKTIGEQQ |
Parental | TIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEV |
.I.AC.ESHQF.PK.FWNG.WRSEWKFTI..PTAQVVGVLKIQVH.YE.GNVQLVSHKDVQDSVTVSNEV | |
Retrocopy | IITACVESHQF*PKTFWNGHWRSEWKFTIIRPTAQVVGVLKIQVHCYEGGNVQLVSHKDVQDSVTVSNEV |
Parental | QTAKEFIKIIEHAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQNA |
QTAKEFIKIIEHAENE.QTAISENY.T.S.T.FKAL.RQLPVTR..IDWNKILSY..GKEMQNA | |
Retrocopy | QTAKEFIKIIEHAENEHQTAISENYRTTSHTSFKALHRQLPVTRMEIDWNKILSYRTGKEMQNA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 22 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .86 RPM |
SRP017611_liver | 0 .00 RPM | 26 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003570 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013548 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000014532 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000000671 | 3 retrocopies | |
Felis catus | ENSFCAG00000013303 | 2 retrocopies |
retro_fcat_700 , retro_fcat_746,
|
Homo sapiens | ENSG00000116489 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023677 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000017963 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015668 | 2 retrocopies | |
Mus musculus | ENSMUSG00000070372 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004191 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000270 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000014074 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000001021 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001110 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013538 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001727 | 5 retrocopies |