RetrogeneDB ID: | retro_tbel_638 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2631:276212..276657(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPZA1 | ||
Ensembl ID: | ENSTBEG00000001727 | ||
Aliases: | None | ||
Description: | capping protein (actin filament) muscle Z-line, alpha 1 [Source:HGNC Symbol;Acc:1488] |
Percent Identity: | 67.97 % |
Parental protein coverage: | 60.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | NLLREGAAHAFAQYNMDQFTPVKIEGYEDQVLITEHGDL-GNSRFLDPRNKISFKFDHLRKEASDPQPEE |
.LLREG..H...Q...D..T...IEG.ED..L.TE..DL.G..R....R..I.FKFDHLRKEASDPQ.EE | |
Retrocopy | HLLREGE-HMHCQITRDSYTR-EIEGFEDSGLYTELCDL<GYDRL*ITRTNIFFKFDHLRKEASDPQAEE |
Parental | -VDSGLKSWRESCDSALRAYVKDHYSNGFCTVYAKTIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTI |
..D.GLKSW.E.CDSA.RAYVK.HY.NGFCTVYA.TIDGQQTIIA..E.HQ.QPKNFWN.RWRSE.KFT. | |
Retrocopy | <IDGGLKSWKEPCDSAFRAYVKGHYPNGFCTVYATTIDGQQTIIARREGHQLQPKNFWNSRWRSEGKFTV |
Parental | TPPTAQVVGVLKI |
TPPTAQVVGV..I | |
Retrocopy | TPPTAQVVGVRTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003570 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013548 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000014532 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000000671 | 3 retrocopies | |
Felis catus | ENSFCAG00000013303 | 2 retrocopies | |
Homo sapiens | ENSG00000116489 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023677 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000017963 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015668 | 2 retrocopies | |
Mus musculus | ENSMUSG00000070372 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004191 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000270 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000014074 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000001021 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001110 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013538 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001727 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000012657 | 2 retrocopies |