RetrogeneDB ID: | retro_ptro_3245 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | X:88099131..88099602(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPZA1 | ||
Ensembl ID: | ENSPTRG00000001110 | ||
Aliases: | None | ||
Description: | capping protein (actin filament) muscle Z-line, alpha 1 [Source:HGNC Symbol;Acc:1488] |
Percent Identity: | 87.9 % |
Parental protein coverage: | 54.58 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AYVKDHYSNGFCTVYARITDGQ--IIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVVGVLKIQVHYY |
AYVKD.YSNGFCTVYA.....Q..IIA.IESHQFQPKNFWNG.WRSEWKF.ITP.TAQVVGVLKIQVHYY | |
Retrocopy | AYVKDYYSNGFCTVYAKTIN*QQAIIAHIESHQFQPKNFWNGGWRSEWKFAITPSTAQVVGVLKIQVHYY |
Parental | EDGNVQLVSHKDVQDSLTVSNEAQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKI |
E.G.VQLVSHKDVQDSLTVSNEAQTAKEFIKIIENAENEYQTAISENYQT.SDTTFKAL.RQLPVT.TKI | |
Retrocopy | EVGIVQLVSHKDVQDSLTVSNEAQTAKEFIKIIENAENEYQTAISENYQTLSDTTFKALCRQLPVTCTKI |
Parental | DWNKILSYKIGKEMQNA |
DWNKI.SYKIGK.MQNA | |
Retrocopy | DWNKIVSYKIGKDMQNA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .64 RPM |
SRP007412_cerebellum | 0 .04 RPM | 14 .66 RPM |
SRP007412_heart | 0 .00 RPM | 15 .94 RPM |
SRP007412_kidney | 0 .00 RPM | 19 .93 RPM |
SRP007412_liver | 0 .03 RPM | 20 .43 RPM |
SRP007412_testis | 0 .11 RPM | 77 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003570 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013548 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000014532 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000000671 | 3 retrocopies | |
Felis catus | ENSFCAG00000013303 | 2 retrocopies | |
Homo sapiens | ENSG00000116489 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023677 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000017963 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015668 | 2 retrocopies | |
Mus musculus | ENSMUSG00000070372 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004191 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000270 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000014074 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000001021 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001110 | 2 retrocopies |
retro_ptro_1710, retro_ptro_3245 ,
|
Rattus norvegicus | ENSRNOG00000013538 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001727 | 5 retrocopies |