RetrogeneDB ID: | retro_pabe_3789 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:86521094..86521742(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPZA1 | ||
Ensembl ID: | ENSPPYG00000001021 | ||
Aliases: | None | ||
Description: | F-actin-capping protein subunit alpha-1 [Source:RefSeq peptide;Acc:NP_001127090] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 75.52 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MADFDDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRVLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGY |
MADFDD.VSDEEKV.IAAKFITHAPP.EFNE.FNDV..LLNND.LLREGAAHAF.QYN.DQF.PVKIEGY | |
Retrocopy | MADFDDCVSDEEKVGIAAKFITHAPPEEFNEAFNDVQLLLNNDSLLREGAAHAFVQYNVDQFMPVKIEGY |
Parental | EDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEEVDGGLKSWRESCDSALRAYVKDHYSNGF |
EDQVLIT.H.DLGNSRF.DPRNKISFKFD.L.KE.SDPQPEEVDGGLKSWRESCD.ALRAYVKD.YSN.F | |
Retrocopy | EDQVLITQHSDLGNSRF*DPRNKISFKFDNL*KESSDPQPEEVDGGLKSWRESCDYALRAYVKDYYSNVF |
Parental | CTVYAKTIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVVGVLKIQVHYYEDGNVQLVSHK |
CTVYAKTI..QQTIIA.IESHQFQPKNFWNG.WRSE.KFT.TPPTAQVVGVLKIQVHYYE.G.VQLVSHK | |
Retrocopy | CTVYAKTIN*QQTIIAHIESHQFQPKNFWNGGWRSE*KFTTTPPTAQVVGVLKIQVHYYEVGIVQLVSHK |
Parental | DVQDSL |
DVQDSL | |
Retrocopy | DVQDSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 22 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 34 .90 RPM |
SRP007412_heart | 0 .00 RPM | 21 .28 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .18 RPM |
SRP007412_liver | 0 .00 RPM | 54 .78 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4871 |
Macaca mulatta | retro_mmul_2612 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003570 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013548 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000014532 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000000671 | 3 retrocopies | |
Felis catus | ENSFCAG00000013303 | 2 retrocopies | |
Homo sapiens | ENSG00000116489 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023677 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000017963 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015668 | 2 retrocopies | |
Mus musculus | ENSMUSG00000070372 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004191 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000270 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000014074 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000001021 | 2 retrocopies |
retro_pabe_2116, retro_pabe_3789 ,
|
Pongo abelii | ENSPPYG00000017933 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001110 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013538 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001727 | 5 retrocopies |