RetrogeneDB ID: | retro_fcat_724 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:104902206..104902509(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS36 | ||
Ensembl ID: | ENSFCAG00000031782 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S36 [Source:HGNC Symbol;Acc:16631] |
Percent Identity: | 85.15 % |
Parental protein coverage: | 98.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GSKMASASRVVQVVKPHTPLIRFPDRRDNPKPNVSEVLRSAGLPSHSSSISQHSKGSKSPDLLMHQGPPD |
G.KMASASRVVQVVKPH.P.IRFPDRRDNPK.NVSEVL.SAGLPS.SSSISQ.SK..KSPDLL.HQGPPD | |
Retrocopy | GIKMASASRVVQVVKPHSP*IRFPDRRDNPKLNVSEVLSSAGLPSPSSSISQRSKSRKSPDLLIHQGPPD |
Parental | TAEIIKTLPQKYRRKLVSQEEMEFIQRGGPE |
TAEIIKTL.QKYRRKLVS.E..EFIQ.GGPE | |
Retrocopy | TAEIIKTLRQKYRRKLVSREGIEFIQPGGPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 25 .71 RPM |
SRP017611_kidney | 0 .31 RPM | 46 .79 RPM |
SRP017611_liver | 0 .00 RPM | 20 .22 RPM |