Parental gene:

MRPS36, ENSPTRG00000016944

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:5:46000678..46016643(-)


>ENSPTRG00000016944
ATGATGGGCAGCAAGATGGCGTCTGCTAGTAGGGTCGTTCAGGTAGTCAAACCACACACTCCATTAATAAGGTTTCCTGA
CAGAAGAGACAATCCTAAACCCAATGTATCAGAAGCTTTGAGATCAGCAGGGCTACCATCTCACTCTTCTGTAATTTCAC
AACATTCTAAAGGAAGTAAATCACCAGATTTGCTGATGTATCAGGGTCCACCAGACACTGCAGAAATAATAAAAACATTA
CCTCAGAAATACAGAAGGAAACTTGTGTCTCAAGAAGAAATGGAATTTATCCAACGTGGAGGTCCTGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 10 .81 RPM
SRP007412_cerebellum 4 .30 RPM
SRP007412_heart 13 .96 RPM
SRP007412_kidney 15 .40 RPM
SRP007412_liver 5 .63 RPM
SRP007412_testis 5 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003161 ortholog_one2one 2 retrogenes
retro_amel_1838, retro_amel_565,
Callithrix jacchus ENSCJAG00000016092 ortholog_one2many 2 retrogenes
retro_cjac_3202, retro_cjac_45,
Dipodomys ordii ENSDORG00000007063 ortholog_one2many 1 retrogene
retro_dord_110,
Echinops telfairi ENSETEG00000019493 ortholog_one2one 2 retrogenes
retro_etel_1624, retro_etel_625,
Felis catus ENSFCAG00000031782 ortholog_one2one 1 retrogene
retro_fcat_724,
Homo sapiens ENSG00000134056 ortholog_one2one 2 retrogenes
retro_hsap_2750, retro_hsap_823,
Loxodonta africana ENSLAFG00000007932 ortholog_one2one 2 retrogenes
retro_lafr_1243, retro_lafr_598,
Monodelphis domestica ENSMODG00000019701 ortholog_one2one 1 retrogene
retro_mdom_1559,
Mus musculus ENSMUSG00000061474 ortholog_one2many 4 retrogenes
retro_mmus_105, retro_mmus_123, retro_mmus_3223, retro_mmus_753,
Nomascus leucogenys ENSNLEG00000004071 ortholog_one2one 4 retrogenes
retro_nleu_1545, retro_nleu_196, retro_nleu_2243, retro_nleu_257,
Oryctolagus cuniculus ENSOCUG00000005261 ortholog_one2one 2 retrogenes
retro_ocun_1057, retro_ocun_1109,
Otolemur garnettii ENSOGAG00000024260 ortholog_one2one 9 retrogenes
retro_ogar_1166, retro_ogar_1716, retro_ogar_2238, retro_ogar_2363, retro_ogar_2629, retro_ogar_3382, retro_ogar_711, retro_ogar_790, retro_ogar_869,
Ochotona princeps ENSOPRG00000011392 ortholog_one2one 1 retrogene
retro_opri_587,
Pongo abelii ENSPPYG00000015524 ortholog_one2one 3 retrogenes
retro_pabe_2219, retro_pabe_735, retro_pabe_917,
Pteropus vampyrus ENSPVAG00000010843 ortholog_one2one 1 retrogene
retro_pvam_174,
Rattus norvegicus ENSRNOG00000048862 ortholog_one2many 2 retrogenes
retro_rnor_1792, retro_rnor_2014,
Ictidomys tridecemlineatus ENSSTOG00000021863 ortholog_one2one 2 retrogenes
retro_itri_1039, retro_itri_938,
Tupaia belangeri ENSTBEG00000012048 ortholog_one2one 22 retrogenes
retro_tbel_1313, retro_tbel_1494, retro_tbel_1527, retro_tbel_224, retro_tbel_2404, retro_tbel_2661, retro_tbel_2755, retro_tbel_2762, retro_tbel_2924, retro_tbel_2934, retro_tbel_3239, retro_tbel_3240, retro_tbel_359, retro_tbel_3891, retro_tbel_3893, retro_tbel_3941, retro_tbel_4124, retro_tbel_4429, retro_tbel_4515, retro_tbel_4543, retro_tbel_4592, retro_tbel_702,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_573 69.52 100.00
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2. retro_ptro_690 76.36 52.43
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3. retro_ptro_1858 98.28 56.31
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4. retro_ptro_2038 63.00 95.15
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Download FASTA sequences of all ENSPTRG00000016944 retrocopies