RetrogeneDB ID: | retro_ptro_1858 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 3:6900365..6900539(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS36 | ||
Ensembl ID: | ENSPTRG00000016944 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.28 % |
Parental protein coverage: | 56.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MMGSKMASASRVVQVVKPHTPLIRFPDRRDNPKPNVSEALRSAGLPSHSSVISQHSKG |
M.GSKMASASRVVQVVKPHTPLIRFPDRRDNPKPNVSEALRSAGLPSHSSVISQHSKG | |
Retrocopy | MIGSKMASASRVVQVVKPHTPLIRFPDRRDNPKPNVSEALRSAGLPSHSSVISQHSKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .30 RPM |
SRP007412_heart | 0 .03 RPM | 13 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 15 .40 RPM |
SRP007412_liver | 0 .00 RPM | 5 .63 RPM |
SRP007412_testis | 0 .00 RPM | 5 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2750 |
Pongo abelii | retro_pabe_2219 |