RetrogeneDB ID: | retro_fcat_816 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:18112512..18112978(+) | ||
Located in intron of: | ENSFCAG00000022495 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS19 | ||
Ensembl ID: | ENSFCAG00000008125 | ||
Aliases: | None | ||
Description: | ribosomal protein S19 [Source:HGNC Symbol;Acc:10402] |
Percent Identity: | 70.89 % |
Parental protein coverage: | 99.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LSPGWQRGGRTMPGVTVKDVNQQ-EFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAA |
LSPGWQR.G..MPGV.VKDVN...EFVRALAAFLKKSG..KVP.WVDTVKLA.HKE.AP..ENWFYT.A. | |
Retrocopy | LSPGWQRVGLSMPGVSVKDVNHR<EFVRALAAFLKKSGEPKVPQWVDTVKLARHKEPAPCNENWFYTQAV |
Parental | STARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQ-G |
ST..HL.L.G.AGV..M..I.G..QRN..MPSHFSR.SK..A.RVLQALE.LK..EKD..GG.KLTPQ.G | |
Retrocopy | STVWHLHLQGSAGVSFMANICGRLQRNKFMPSHFSRDSKKMAHRVLQALERLKTMEKDRGGGCKLTPQ<G |
Parental | QRDLDRIAGQVAAANKKH |
.R.LDRIAGQVAAA...H | |
Retrocopy | MRALDRIAGQVAAAT*NH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 54 .40 RPM |
SRP017611_kidney | 0 .31 RPM | 225 .90 RPM |
SRP017611_liver | 0 .00 RPM | 119 .19 RPM |